Gene detail

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Gene detail information of Glyur000142s00009098.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42960.1	6.00E-51	Protein kinase superfamily protein
NR	XP_003626508.1	0	Wall-associated receptor kinase-like protein [Medicago truncatula]
COG	YP_005517714.1	9.00E-26	serine/threonine protein kinase with PASTA sensor(s) [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1]
Swissprot	tr\|Q9SJG2\|Y2296_ARATH	3.00E-56	Probable receptor-like protein kinase At2g42960
trEMBL	tr\|G7L302\|G7L302_MEDTR	0	Tyrosine kinase family protein {ECO:0000313\|EMBL:AES82726.1}

Sequence

Transcript Sequence

>Glyur000142s00009098.1
ATGGCTCTGCACCCTTTCTTTGCATTTATATTTATTGCAATACTCGTTGACTCTTCCACACTCGTATCCTCTGCACCCAACGATACCCAAGGTACATGTGTGTTGGGTTTCAAAGCATACCAATCCGAATACGTGCCATTTGGTGAATGCGGGGGTGTGAAAGAGGACATAACCACTTGGGGTGGTGTTGGTGATGGTTTCCCAACCACTCTGTGCTGCCGCAATGCCCTTACCGTTCTGTCAGAAGCGATGGCCTCACAGGCCCGTAACTCATCGGGACAAGTGTTCGTTTCACAAGACCAATGGAATNGCTGTGGCGACTCCTTTCACCCGCAACAGGGGATGTCACTCTCTTCATGTGGCTTCGACAATTTTTACTTGGGCAGCTCCAAATGCTCCAGCTTGGTTCTGCAAGATGTTCGGGTCTTGCAGAAACAGTACACAGATGCATTGGACAAATGCAGCCACTTCGACCATCCATTTGACGAGTCCTGTGCGGATTGTAGCGGCGCGATATTGAGTGTGAGAGATGGCTTATATGCTCAACAAATGGGGCAGGACAGCAGCAACAATGATACTGAGAGAGCCATATGCGGGTCAATGAAAAAACTGGTGTTGGGCGTGGTGGTAGCTGCCTTTGCGGTATTGCTTATTGTTTTTGTGTTGAAATACTGTGTGTTGAAGAAGAAGCCTCGCAGGCATGCTCAGTTGAAGGAGATATCTACATGGTCTGGATTGTACTGGTTCACCAAAGCTGAAATTGAGAACGCCATGAACTATGGAAACGGAAGGATAAGCCTTGGGCGTGGGAGTGCGGGTCAGGTGTACAGAGGCGTTTTGCCCAGTGGCCAGGTCGTTGCCATCAAGCACTTGACCAAGAGTAACATCTCTGTCTCTGAGTCTTTCACTCGAGAACTCGCNGGTCTCTCCAGGCTCCGTCACCCAAACCTCGTTTGTCTCTTCGGCTGTTGCATGGAAGATGGGGAGAGATATTTGGTGTATGAATTCTGTGCAAACGGAAATCTGGCTCAACATCTCTTGAGAAGAGACAGCCATTTGACGTGGGAAACAAGGGTGAGAGTTTTGAGAGATTGTTCATTCGCACTCAAGTATCTCCACCATCACATTGAGGGCTGTGTTGTCCATAGAGATATTAAGCTTACGAACATCCTTTTGACGGAGAAATACGAGGCGAAACTGTCGGATTTTGGGCTGGCGAGGATGATGGGGATGGAAGAGAGCAAGGTGTTCACGGATGTGAGAGGAACCATAGGGTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGTGCCAGTGATGTATACAGTTTTGGAATTGTTGCTTTGCAAATTTTGTCGGGGCAGAAAGTCATCGAATTGGATCTTGATGCCAGAGATCAACTCACTAGAAAGGCAAGGGATGTGAGTATGGGAAAGCGTCCACTGTTGGATTTTGAAGACCCGCGGCTAAAGGGACAAGTTGATAAGGCGGATTTTGGAGCCATCTTACAGATTGCAGTACTGTGTGTTGCCAAATCAAGCACAGGTCGCCCAACCATTGAGGTTGTTTATGACGAATTGGACAAGGTCTACAGGGACATGATTAAGGCACGGAAGCAGAAGGCAAAGCAGGATGCGTCCCCATCAACATCCACCTCCAGCTCTAATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	53089	57584	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009098.1	PF00069.20	Pkinase	266	473	9.60E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.237
SRR1783600	control	0.273
SRR1783602	moderate drought stress	0.967
SRR1811619	moderate drought stress	0.949

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.293
DRR006520	Root Summer glycyrrhizin high producing strain	0.321
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.100
DRR006524	Root Summer glycyrrhizin low producing strain	0.092
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.086
SRR2868004	Drought Stress(Tissue:root)	0.733
SRR2967015	Control (Tissue:root)	0.980

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.366
SRR9715740	Leave	0.160
SRR9715741	Leave	0.336
SRR9715739	Root	0.534
SRR9715742	Root	0.063
SRR9715743	Root	0.093

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.121
SRR8749028	MeJA induced 9h	0.160
SRR8749029	MeJA induced 9h	0.036
SRR8749030	Uninduced	0.179
SRR8749031	Uninduced	0.182
SRR8749032	Uninduced	0.264

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.631
SRR8400027	Control-Root	0.611