Gene detail information of Glyur000142s00009099.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08550.2 | 6.00E-145 | non-photochemical quenching 1 |
| NR | NP_001240949.1 | 0 | violaxanthin de-epoxidase, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9SM43|VDE_SPIOL | 0 | Violaxanthin de-epoxidase, chloroplastic (Precursor) |
| trEMBL | tr|G0Z355|G0Z355_SOYBN | 0 | Violaxanthin de-epoxidase 2 {ECO:0000313|EMBL:AEK69517.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 59864 | 62842 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09839 | VDE, NPQ1 | EC:1.23.5.1 | Carotenoid biosynthesis | map00906 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009099.1 | PF07137.6 | VDE | 199 | 308 | 7.60E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.469 |
| SRR1783600 | control | 3.546 |
| SRR1783602 | moderate drought stress | 2.733 |
| SRR1811619 | moderate drought stress | 2.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.763 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.020 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.251 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.574 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.915 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.900 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 71.128 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 71.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.437 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.195 |
| SRR2967015 | Control (Tissue:root) | 5.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 56.925 |
| SRR9715740 | Leave | 84.188 |
| SRR9715741 | Leave | 47.224 |
| SRR9715739 | Root | 0.451 |
| SRR9715742 | Root | 2.992 |
| SRR9715743 | Root | 1.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.128 |
| SRR8749028 | MeJA induced 9h | 51.876 |
| SRR8749029 | MeJA induced 9h | 68.522 |
| SRR8749030 | Uninduced | 74.594 |
| SRR8749031 | Uninduced | 32.725 |
| SRR8749032 | Uninduced | 26.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.175 |
| SRR8400027 | Control-Root | 7.228 |