Gene detail information of Glyur000142s00009102.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07360.1 | 1.00E-130 | plant U-box 9 |
| NR | XP_004494763.1 | 0 | PREDICTED: U-box domain-containing protein 9-like [Cicer arietinum] |
| COG | YP_001958455.1 | 7.00E-12 | hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9SRT0|PUB9_ARATH | 2.00E-168 | U-box domain-containing protein 9 |
| trEMBL | tr|V7BRN2|V7BRN2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW19236.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 78871 | 81276 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009102.1 | PF04564.10 | U-box | 72 | 141 | 7.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.752 |
| SRR1783600 | control | 55.111 |
| SRR1783602 | moderate drought stress | 27.107 |
| SRR1811619 | moderate drought stress | 26.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.775 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 69.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 46.164 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.174 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 120.053 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 119.699 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.306 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.618 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.958 |
| SRR2967015 | Control (Tissue:root) | 37.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 45.745 |
| SRR9715740 | Leave | 29.855 |
| SRR9715741 | Leave | 37.938 |
| SRR9715739 | Root | 38.000 |
| SRR9715742 | Root | 86.202 |
| SRR9715743 | Root | 78.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 198.816 |
| SRR8749028 | MeJA induced 9h | 161.831 |
| SRR8749029 | MeJA induced 9h | 238.281 |
| SRR8749030 | Uninduced | 227.560 |
| SRR8749031 | Uninduced | 139.839 |
| SRR8749032 | Uninduced | 132.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 96.007 |
| SRR8400027 | Control-Root | 110.016 |