Gene detail information of Glyur000142s00009112.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71260.15.00E-69WHIRLY 2
NRXP_007147230.11.54E-146hypothetical protein PHAVU_006G106800g [Phaseolus vulgaris]
Swissprottr|D9J034|WHY2_SOLTU1.00E-89Single-stranded DNA-bindig protein WHY2, mitochondrial (Precursor)
trEMBLtr|V7BML4|V7BML4_PHAVU6.00E-147Uncharacterized protein {ECO:0000313|EMBL:ESW19224.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00142186316189191-


Gene family

Gene familysubfamily
Transcription Factors FamilyWhirly


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000142s00009112.1PF08536.6Whirly1132499.60E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.258
SRR1783600control24.279
SRR1783602moderate drought stress23.563
SRR1811619moderate drought stress23.620

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.180
DRR006520Root Summer glycyrrhizin high producing strain33.491
DRR006521Root Winter glycyrrhizin high producing strain14.443
DRR006522Root Winter glycyrrhizin high producing strain14.235
DRR006523Root Summer glycyrrhizin low producing strain51.588
DRR006524Root Summer glycyrrhizin low producing strain52.997
DRR006525Leaf Summer glycyrrhizin high producing strain19.756
DRR006526Leaf Summer glycyrrhizin high producing strain19.598

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.723
SRR2868004Drought Stress(Tissue:root)20.227
SRR2967015Control (Tissue:root)20.347

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.472
SRR9715740Leave19.708
SRR9715741Leave16.056
SRR9715739Root16.852
SRR9715742Root16.282
SRR9715743Root13.711

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.629
SRR8749028MeJA induced 9h13.393
SRR8749029MeJA induced 9h18.128
SRR8749030Uninduced7.390
SRR8749031Uninduced3.948
SRR8749032Uninduced4.737

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.416
SRR8400027Control-Root30.837

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved