Gene detail

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Gene detail information of Glyur000142s00009121.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08650.1	1.00E-92	phosphoenolpyruvate carboxylase kinase 1
NR	XP_007144008.1	1.71E-157	hypothetical protein PHAVU_007G121500g [Phaseolus vulgaris]
COG	YP_006921214.1	7.00E-39	serine/threonine-protein kinase Sps [Thermacetogenium phaeum DSM 12270]
Swissprot	tr\|Q9SPK4\|PPCK1_ARATH	5.00E-115	Phosphoenolpyruvate carboxylase kinase 1
trEMBL	tr\|V7BDU8\|V7BDU8_PHAVU	6.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:ESW16002.1}

Sequence

Transcript Sequence

>Glyur000142s00009121.1
CACAAACAGAACAAACAAACAGAACAGAGAGAAGGCTAAGGAGAGAAGAGAAACAGAATGTGTGAAGAAGCGTTGAAGAAGAAAGAATACCAAGTAATGGAAGAGATCGGTCGTGGCAGGTTCGGCACGGTGTTCCGCTGCTTCCACCCGAATTCAAACCAATCTTACGCCATCAAGGCCATCGACAAGAGCCTCCTAACCGATTCCACAGACCGCGAGTGCCTCGACAACGAGTCCAAATTCATGACCCTCCTCTCCCCACACCCAAACCTCGTCCAAATCTTCGACGCCTTNGAGGAATCCCACTTCTCCTTCCTCGTACTCGACCTCTGTCAACCCATTACCCTCTTCGACACCATCGCCAACGGACCCTTGTCGGAACCCCACGCCGCTTCCCTCCTGAAGCAGCTTCTAGAAGCTCTCGCGCATTGCCACAGGCACGGGGTAGCACACAGAGACATAAAGCCCGAGAACCTTCTGTTCGACTCGATGGGTAACCTTAAAGTCGCCGACTTTGGTTCCGCTGAGTGGTTCGGCGACGGAAAAAACATGAGTGGGGTTGTGGGCACCCCTTATTACGTGGCGCCGGAAGTTCTGATGGGGAGAGAGTACAATGAGAAGGTTGATGTTTGGAGCAGCGGTGTCCTTCTCTACATTATGTTGGCTGGGATTCCACCCTTTTACGGTGACTCTGCCGCCGAGATTTTTGAGGCGGTGGTGAGGGCCAATCTTAGGTTTCCGACGCGAATATTCAGGTCAGTGTCGACTCCGGCGAAGGATCTCCTCAGGAAGATGATTTGTAGAGATGCCTCTAGGCGAATATCCGCAGAACAAGCCCTGAGGCATCCATGGATATTGAGTGGAGGTGTGACTACTGCTGGTGATCTGTCTCTAAGATGAAGGAAGTGATTTATGCAGTTGCTGCAGCAATAAGTATCCAATTTTGTCTACATATGTATAGATTAGAGACATACACACAGAAGTTCTCTGATTAGATGGTGCAAGGAAAACTTTTATTTAACCTCCTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	224473	225744	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009121.1	PF00069.20	Pkinase	11	266	5.80E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.886
SRR1783600	control	0.891
SRR1783602	moderate drought stress	0.888
SRR1811619	moderate drought stress	0.989

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.210
DRR006520	Root Summer glycyrrhizin high producing strain	0.312
DRR006521	Root Winter glycyrrhizin high producing strain	0.855
DRR006522	Root Winter glycyrrhizin high producing strain	0.741
DRR006523	Root Summer glycyrrhizin low producing strain	0.107
DRR006524	Root Summer glycyrrhizin low producing strain	0.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.241
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.487
SRR2868004	Drought Stress(Tissue:root)	14.380
SRR2967015	Control (Tissue:root)	7.708

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.359
SRR9715740	Leave	0.689
SRR9715741	Leave	1.692
SRR9715739	Root	0.048
SRR9715742	Root	0.000
SRR9715743	Root	0.352

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.417
SRR8749028	MeJA induced 9h	0.105
SRR8749029	MeJA induced 9h	0.173
SRR8749030	Uninduced	0.104
SRR8749031	Uninduced	0.220
SRR8749032	Uninduced	0.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.554
SRR8400027	Control-Root	3.540