Gene detail information of Glyur000142s00009129.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04520.11.00E-57threonine aldolase 2
NRXP_003521772.17.49E-103PREDICTED: uncharacterized protein R102.4-like isoform X1 [Glycine max]
COGYP_844832.15.00E-40threonine aldolase [Syntrophobacter fumaroxidans MPOB]
Swissprottr|Q8RXU4|THA1_ARATH2.00E-74Probable low-specificity L-threonine aldolase 1
trEMBLtr|I1JRS5|I1JRS5_SOYBN3.00E-103Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G41120.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00142290660293348-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01620ltaE EC:4.1.2.48 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016829  lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000142s00009129.1PF01212.16Beta_elim_lyase481558.30E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.821
SRR1783600control2.713
SRR1783602moderate drought stress2.724
SRR1811619moderate drought stress2.895

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.440
DRR006520Root Summer glycyrrhizin high producing strain4.097
DRR006521Root Winter glycyrrhizin high producing strain6.674
DRR006522Root Winter glycyrrhizin high producing strain6.589
DRR006523Root Summer glycyrrhizin low producing strain4.250
DRR006524Root Summer glycyrrhizin low producing strain4.683
DRR006525Leaf Summer glycyrrhizin high producing strain4.026
DRR006526Leaf Summer glycyrrhizin high producing strain3.988

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.339
SRR2868004Drought Stress(Tissue:root)7.910
SRR2967015Control (Tissue:root)8.265

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.809
SRR9715740Leave9.993
SRR9715741Leave37.889
SRR9715739Root1.975
SRR9715742Root2.880
SRR9715743Root2.997

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.461
SRR8749028MeJA induced 9h6.377
SRR8749029MeJA induced 9h7.663
SRR8749030Uninduced20.808
SRR8749031Uninduced18.791
SRR8749032Uninduced15.171

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.767
SRR8400027Control-Root7.321

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved