Gene detail information of Glyur000142s00009131.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08630.44.00E-67threonine aldolase 1
NRACJ84635.15.95E-93unknown [Medicago truncatula]
COGYP_005443407.12.00E-50putative threonine aldolase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q8RXU4|THA1_ARATH4.00E-82Probable low-specificity L-threonine aldolase 1
trEMBLtr|B7FIQ6|B7FIQ6_MEDTR2.00E-93Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84635.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00142295190295639+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01620ltaE EC:4.1.2.48 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016829  lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000142s00009131.1PF01212.16Beta_elim_lyase81482.30E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.616
SRR1783600control0.647
SRR1783602moderate drought stress0.890
SRR1811619moderate drought stress0.885

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.495
DRR006520Root Summer glycyrrhizin high producing strain1.395
DRR006521Root Winter glycyrrhizin high producing strain4.202
DRR006522Root Winter glycyrrhizin high producing strain4.532
DRR006523Root Summer glycyrrhizin low producing strain1.799
DRR006524Root Summer glycyrrhizin low producing strain2.090
DRR006525Leaf Summer glycyrrhizin high producing strain4.203
DRR006526Leaf Summer glycyrrhizin high producing strain4.021

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.032
SRR2868004Drought Stress(Tissue:root)5.701
SRR2967015Control (Tissue:root)7.826

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.862
SRR9715740Leave4.798
SRR9715741Leave22.765
SRR9715739Root0.677
SRR9715742Root1.725
SRR9715743Root2.586

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.594
SRR8749028MeJA induced 9h8.544
SRR8749029MeJA induced 9h3.090
SRR8749030Uninduced8.006
SRR8749031Uninduced9.770
SRR8749032Uninduced5.389

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.233
SRR8400027Control-Root3.977

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved