Gene detail

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Gene detail information of Glyur000142s00009132.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G09770.1	cell division cycle 5
NR	XP_004494735.1	PREDICTED: cell division cycle 5-like protein-like [Cicer arietinum]
Swissprot	tr\|P92948\|CDC5L_ARATH	Cell division cycle 5-like protein
trEMBL	tr\|A0A072U4G1\|A0A072U4G1_MEDTR	Cell division control protein, putative {ECO:0000313\|EMBL:KEH24587.1}

Sequence

Transcript Sequence

>Glyur000142s00009132.1
TAAAAAGAGAAAATACGATCCCCGTCCCAGTGAATCTAAACCGGGTTCCCCGTTGGATATTCGAGCTCTGGTTTCCAGTTTGAAGAGCAAAAAAGGTTTTGGTGTTTCGTGTTACTGTCGACTGAACTCGAGGAGAAGAGATCACGCAAGTTTATTGCAATTTGCGGTGCAGCCGGCATCGACACAGACAGAGACTACACTACTCACTAACAAGGTTAGGCCCTGTAGGCTTGCATTTCTGCTCTGAATAATATTTATNTGTATCTGAGAATTGCGTTATCGATATCATTATCATCATCGCCATCGTCATCTCATTGTTGTTGGTATCTGTGAGTGCGGAGGGAGAAGTAAGTAACCTGTAACCCTAGACCGACCTAGAGGAGGGAGGGAGGGTTGATAGAATCAAAACAGAGGGAGAGAGGGATAAGAGAAAGGGGTAGCGAAGATGAGGATTATGATAAANGGCGGTGTGTGGAAGAACACGGAGGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGCAAAAACCAGTGGGCTCGCATCTCTTCCCTTCTCGTCCGCAAATCTGCCAAGCAGTGCAAGGCTCGTTGGTATGAGTGGCTCGACCCTTCCATTAAGAAGACCGAGTGGACCAGAGAAGAGGATGAGAAACTCCTCCATCTTGCTAAGCTCATGCCCACCCAGTGGAGAACCATTGCTCCTATTGTTGGCCGTACTCCTTCCCAGTGCCTTGAACGCTATGAGAAACTCCTTGATGCTGCCTGTGTCAAGGACGACAACTATGAACCCGGTGATGACCCCCGCAAATTGCGTCCCGGGGAAATTGATCCCAATCCCGAGTCAAAGCCTGCTCGCCCGGACCCCGTTGACATGGATGAGGATGAGAAGGAGATGCTCTCCGAGGCACGGGCCCGGTTGGCCAACACCAAAGGTAAGAAGGCAAAGAGGAAGGCCAGGGAAAAACAGCTGGAGGAGGCCAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAGCTCAAGGCCGCCGGAATTGACATCAGGAAGCACAGGAGGAAAAGGAGGGGAATAGACTACAATGCGGAAATCCCCTTTGAGAAGAGACCTCCTCCCGGGTATTTTGATGTTGCCGATGAGGATAGGCCGGTGGAACAGCCCAAGTTCCCTACCACTATTGAAGAGCTCGAGGGAAAAAGAAGGATTGACGTTGAGGCACAGCTCAGAAAGCAAGACATTGCAAGGAATAAAATTGCAGAGAGGCAAGATGCCCCGTCTGCCATTCTGCAGGCCAACAAGCTGAATGACCCGGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATNGCTAAGTTGGGTTATGCCAGTGACCTTGCGGGCAGCGAGGAACTCGCGGAAGGCAGTAGCGCTACACGTGCTCTTCTCTCTAATTATGCACAAACGCCTGGCCAAGCAATGACTCCTTTAAGAACTCCTCAAAGAACACCGGCCGGTAAGGGAGACGCTATCATGATGGAAGCTGAAAATTTGGCCAGGTTGAGGGAGTCTCAGACACCATTGTTGGGAGGAGAGAACCCNGAGTTGCATCCTTCGGATTTTTCTGGGGTCACTCCCAAGAAAAAGGAAATTCAGACTCCAAACCCAATGCTGACCCCGTCTGCAACTCCTGGAGGTGCAAGCCTTACTCCCAGAAGTGGTATGACACCGGCTAGGGATGGTTTTTCTTTTGGCACGACTCCGAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAAGACATGGATATGCATGAAGGTGCTAAACTTGAGCTACGGAGACAAGCTGATATGAGAAGAAGTTTGCGNTCTGGTTTAAGCACCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTACCAGAAGATGCTGAAGAGCCCGAGGAGAAAATTGAAGAGGATATGTCTGATAGAGTNGCTAGAGAAAAGGCAGAAGAAGAGGCACGACAGCAGGCATTGCTTAGAAAACGATCAAAAGTCCTTCAAAGGGGACTTCCTAGGCCTCCTGCTGCATCTCTGGAGCTTATTAGAAACTCCTTGATAAGAGCTGATGGGGACAAGAGTTCNTTTGTTCCACCAACCTCTATTGAGCAAGCCGATGAGATGATAAGAAAGGAGCTTTTTATCTTACTGGAGCATGACAATGCTAAGTATCCACTTGATGAGATAGCCAACAAGGAGAAAAAAAAAGGAGCCAAACGTGTAGCAAATGGGCCTGCTGTCCCNGTGATAGAAGATTTTCAGGAGGATGAGATGAAAGATGCTGATCAGTTGATAAAGGATGAAGCCCAGNATCTTCGTGTGGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCGCATACAACTTGTATTAATGATTTAATGTACTTCATCACCCGTAATGCCTATGGTCTATCAAGTGTTGCTGGAAACATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGCAAGTTGGATGATGGTAAAGAGAAGGTGATACGCCTTGAGAAGAAGGTTACAGTACTCACGCAAGGGTATGAGATGAGAGGGAAAAAAGGTCTTTGGCCACAAATCGAGGCCACTTTCAAGCAGATGGACATAGCTGCAACAGAATTGGAGTGTTTTCAGGCTTTGCAAAAGCAGGAGCAACTAGCAGCATCGCACAGGGTAAACAACCTTTGGGCTGAAGTACAGAAGCAAAAAGAACTAGAGAGAACTTTACAGAAGAGGTATGGGGATCTTATGGCAGAGCTGGAAAGGACACAAAATGTAATGGACCAGTTTAGGGTACAAGCACAACAGCAAGAAGAAACTGAAGCAAAGAATCATGCGCTTGAGAGTACTGAAGCCACAGCCGATGGAATTAATGTACAGGGTACAGAGAATTGCGAAGATGTACCCCACTCAGTGGACCATGGAAGTGTAACATCATTTCGTCCATCTGATGATGGAAAGGGTGACCAGCAAATAGTCATTGTGCAAGACCAGGCCATTTCTGGCTCCAAAAATGACATGGATGTGGATTCTTGTAAAGAGCANATGACAAACAGCACTGATGTAAAATTGCCAGATGCCCCTGCTGCAGAGGATGGCAATGCAGAAGTGGTAGAAGGTAAAAACATTGAGAGTAATATTGACAACAGAGAAAATTATTTGATATTTATCAAGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	296372	301391	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009132.1	PF13921.1	Myb_DNA-bind_6	10	70	1.10E-13
Glyur000142s00009132.1	PF11831.3	Myb_Cef	406	660	8.30E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.442
SRR1783600	control	27.227
SRR1783602	moderate drought stress	25.822
SRR1811619	moderate drought stress	25.330

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.075
DRR006520	Root Summer glycyrrhizin high producing strain	21.685
DRR006521	Root Winter glycyrrhizin high producing strain	18.887
DRR006522	Root Winter glycyrrhizin high producing strain	18.921
DRR006523	Root Summer glycyrrhizin low producing strain	17.882
DRR006524	Root Summer glycyrrhizin low producing strain	18.356
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.102
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.064

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	33.216
SRR2868004	Drought Stress(Tissue:root)	32.211
SRR2967015	Control (Tissue:root)	31.586

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.644
SRR9715740	Leave	15.353
SRR9715741	Leave	12.013
SRR9715739	Root	2.822
SRR9715742	Root	30.013
SRR9715743	Root	24.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.592
SRR8749028	MeJA induced 9h	21.732
SRR8749029	MeJA induced 9h	10.255
SRR8749030	Uninduced	8.039
SRR8749031	Uninduced	4.959
SRR8749032	Uninduced	2.750

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	30.863
SRR8400027	Control-Root	31.228