Gene detail information of Glyur000143s00011189.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53340.1 | 2.00E-132 | Galactosyltransferase family protein |
| NR | AES93992.2 | 0 | beta-1,3-galactosyltransferase-like protein [Medicago truncatula] |
| Swissprot | tr|Q94F27|B3GTB_ARATH | 3.00E-165 | Probable beta-1,3-galactosyltransferase 11 |
| trEMBL | tr|G7KAP6|G7KAP6_MEDTR | 0 | Beta-1,3-galactosyltransferase-like protein {ECO:0000313|EMBL:AES93992.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 35962 | 42646 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT31 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011189.1 | PF13334.1 | DUF4094 | 17 | 95 | 6.50E-13 |
| Glyur000143s00011189.1 | PF01762.16 | Galactosyl_T | 129 | 324 | 3.50E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.107 |
| SRR1783600 | control | 9.149 |
| SRR1783602 | moderate drought stress | 5.026 |
| SRR1811619 | moderate drought stress | 5.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.756 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.276 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.491 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.530 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.954 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.138 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.329 |
| SRR2967015 | Control (Tissue:root) | 8.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.681 |
| SRR9715740 | Leave | 4.558 |
| SRR9715741 | Leave | 2.846 |
| SRR9715739 | Root | 0.740 |
| SRR9715742 | Root | 2.386 |
| SRR9715743 | Root | 1.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.651 |
| SRR8749028 | MeJA induced 9h | 9.536 |
| SRR8749029 | MeJA induced 9h | 9.783 |
| SRR8749030 | Uninduced | 12.390 |
| SRR8749031 | Uninduced | 8.861 |
| SRR8749032 | Uninduced | 4.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.860 |
| SRR8400027 | Control-Root | 10.881 |