Gene detail

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Gene detail information of Glyur000143s00011206.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41580.1	4.00E-106	RING/U-box superfamily protein
NR	XP_004511551.1	0	PREDICTED: E3 SUMO-protein ligase pli1-like isoform X1 [Cicer arietinum]
COG	YP_004972543.1	3.00E-06	translation initiation factor IF-2 [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|Q6ASW7\|SIZ2_ORYSJ	4.00E-10	E3 SUMO-protein ligase SIZ2
trEMBL	tr\|O04238\|O04238_VICFA	0	Transcription factor {ECO:0000313\|EMBL:CAA66482.1}

Sequence

Transcript Sequence

>Glyur000143s00011206.1
ATCTATATGCGTGTCTCACAATTTTTATTTCTTCTTTATTTTCTTATGACACCCAGACAAAGGAGAACGCCATCACCCCCTTCTCCCATTCTTAACTCTCTTAAGAATTTCTCCTCGTATCGTAACCACAGGCGTTAAAAACAGTAGTACCTTGAACGAATTCGTGTTTGTTTAGGGAGCAGTTTTCTCCCTCTCTTCGCAGCACCAAAAAAAAAAGGAAAGCACGGTGGAGATGAACCCTTCGCCGACGTTGGCAATGCCACCGGAGTTGGGCCCGTGGAGTGGAACCGGATTATCGCCGTCGGCCGTCAACTCGTATAGAATCAGNGCTGTTGTGGAGCGTTTGGCTTTGCATCTCGTACCCGGCAACCGAAGCGACTCTATCGAATTTTATAACCTCTGCCTCTCCCTCGCTCGAGGTATTGATTATGCACTTGCCAATGGTGAAACTCCGGGAAAAGTTAATGAACTGGCTATGTTGATGAAACAGGTTTGTAAACGGAAGAATGATGAAATATCACAAGCAGCAATGATGAATGCCTGTAAAATTGGATGGTTCCAGACGAAAGTGTCAGAAGAACTTTTAACTATTGCTGATGAGGAAAGATCTACTGCAGCCAGGGAAATGTTCTATCCAAAAATGAAATTGGGTCCAATACTCGTGTCAATTGAAGCCAAGCCTGGATATGGAGCTTCTGCTGTTGACTTTCATCTTACAAAGAGCAAAGTTCTACAGGATAAAATTTGGTTATTGGTGGCACAAACTGATAACATTGAGACATCTGCATGCCTCATCAGCCCTCAGCAAGTGAATTTTCTCCTGAATGGAAAAGGAGTAGACCCAAGGACTAATGTTCGAATGGATCCTGGACCACAGATGCCAACTAATGTGACTGGTATACTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGTCAGTTCAATGGTCACTATATTATAGTTGTTGCCTATATGAGTGTTACATCCTTGCCTGAGCGACCAGTTCTTCAAGATTATGTTCAGCCTGCTGTTACTTCTGTTGATTCAGATTCAGATATTATTGAGGGGCCATCACGGATTTCACTTAATTGTCCCATAAGCTTTACACGTATCAAGACTCCTGTTAAAGGGCATTCATGCAAACATTTCCAGTGCTTCGACTTTGACAACTTCATTAATATAAATGTTAAGAGGCCATCCTGGCGCTGCCCCCATTGCAATCAGTATATCCTGAAAAATGTTGGTAAGAACATTGTGGAAGTGATTGTCCATGCTGATGGATCGTGGAAGGCAGTCTTGGAAAATGATCACGATGTGGATAAGATACAAAATAAGGCCTGCAATTCTGAAAAGGAACAGACTGAACAACAAGAATCTATTTGCTCTCCTAGTACTGTTCCNGATGTTTTGGACCTCACCAACGATGATAATCATTTGGAGATGATGGACACTTGGGAAACTGCAGATAGAAAACCTTTTCAGGCCTCTGTCCTTAGTCAATTTGTCACCCCTAATTCTACTTCCTTGGGTATGAACTCAACTGGTTTTAATCAAAATGTTTCTGCTCAAATAGAAGATGAGTTTTGGGCTGGAGTTTTTCTTGCCTGCAGTGGGTCTGATACTCCAACAGTTGGTGTCGCTGAGCATCCTGTTCCGCCTGATACTGTTTCTCCTGCATTTAATCAGGGAGCTGAGAGTCATGACAATAACCCTGCCATGCATAACCAGCTTTCTGCACTAAATAACTTGCAGTTGCAATTGAATTATAACTCAGTTGTTAATGAGTATGGGAGGTCATCCTCAATGCCGAGACATATTAACAGGACTCCGGTAGCTGTTCAGGCCCTCCCNGTCCAATCTCAGGCATTGGGACCACAACAAAATTCAGTAACTAATTTGGACTCCTTTCTAACCAGCAGTTCCTCCGCTACTCCTCATGTTTCTTTGTCCAACCCTGCTTCTTCAGATCCTTTCAATGCCATACTGAGTGATACAGAAAGACAGCAACATTTTTCTCGATCCCCACTGAATCTGCCTCAGGTCTCTGGTGTAAATTCATCTCCATTAACATTGCAGCATCAATCAGCANCACAGAACCGAGTGCCACCAGTTAATACGTCAGCACCAACTCAATCGCAAAACCCATACAGAGCATCTGGCATGTTTAGTGATTTTAGAAATCCACACCTGCAGCAAGCTCTGAATCACCGGCCATCAAATACCCAACGGTCCCACATCCAGCAAGGGGTTTCACGACCTGGGATTGTTCAGGCAGCTGGAGTGTCACCAAACAGCCAACAAGCCAGAGTTATGCCTTCTTCTCAGGTTACCAGACAAGGAGAGCAAAGAGGAAGTCTTGGAGGAGCAGTACAGTCAGTTTCTAGGCCTGATGAATTATTCAATTCNACCCCAGACCAGAATTGGCGTCCTACTTCACGAATGCGTGGAAGTCTTGCAGGTCGGGTTTTTTCTGATGATATTAGGCAGCGAATAATTGCGCCAACACAACCAGTTCCAAATTCAAGTTTGAGACCACAAGGTCCACCACAACCAGTTCCAAGTTCAAGTTCAAGACCACAAGGCTCACAGCCAGTTCAAAGTTCAAGACCACAAGGTCCACAACCAATTCCAAGTTCAAGTTCAAGACCACAAGGTCCACAACCAGTTCCAAGTTCAAGACCACAAGGTCCACAACCAGTTCCAAGTTCAAGACCGCAAGGTCCACAACCAGTTCCAGGTTCAAGACCACAGGGTCCACAACCAGTCCGACCAACCAGTGTGTCACCCCAACTGGATGTGCTTGTTGCAAACAATAGAAATGCTCACAAACAGTCTCCGAGTACATAATATTTCGGGAAGGCTCTACTCGCGCATGCTTGGAAGATAATATATATTAGAGAGACGTCAATGTCTTCTGCGCTTGGGTGGTAAATATTATTACTAGCAATATATGGGGAAAAACAAGTGCATGTTCCTTTCAGGTATATTTGACTATAACTGGACATGAAATGTTTGTTAATGTTGTTCACTGCAGAACTGAAAGGGGAAAAGAAATCTTGTTTATGTCAATATGGGGAATTGAATTATCATGGTGTAGACATGGCAAGTGAAAGATCTTTCCTGCTTCAAGCGTATATTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	148639	156015	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0008270 zinc ion binding

GO:0019789 SUMO transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011206.1	PF02891.15	zf-MIZ	283	331	7.90E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.875
SRR1783600	control	24.702
SRR1783602	moderate drought stress	32.067
SRR1811619	moderate drought stress	32.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.716
DRR006520	Root Summer glycyrrhizin high producing strain	26.375
DRR006521	Root Winter glycyrrhizin high producing strain	62.713
DRR006522	Root Winter glycyrrhizin high producing strain	61.272
DRR006523	Root Summer glycyrrhizin low producing strain	28.093
DRR006524	Root Summer glycyrrhizin low producing strain	28.256
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.742

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.032
SRR2868004	Drought Stress(Tissue:root)	22.203
SRR2967015	Control (Tissue:root)	27.992

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	17.833
SRR9715740	Leave	20.674
SRR9715741	Leave	21.045
SRR9715739	Root	4.112
SRR9715742	Root	15.842
SRR9715743	Root	12.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.836
SRR8749028	MeJA induced 9h	45.465
SRR8749029	MeJA induced 9h	35.113
SRR8749030	Uninduced	43.699
SRR8749031	Uninduced	41.628
SRR8749032	Uninduced	25.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.400
SRR8400027	Control-Root	24.434