Gene detail information of Glyur000143s00011209.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23560.1 | 3.00E-169 | glycosyl hydrolase 9B15 |
| NR | XP_004511554.1 | 0 | PREDICTED: endoglucanase-like [Cicer arietinum] |
| COG | YP_004908734.1 | 2.00E-79 | putative endoglucanase precursor [Kitasatospora setae KM-6054] |
| Swissprot | tr|P22503|GUN_PHAVU | 0 | Endoglucanase (Precursor) |
| trEMBL | tr|Q43105|Q43105_PHAVU | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 168532 | 171986 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011209.1 | PF00759.14 | Glyco_hydro_9 | 44 | 124 | 2.50E-31 |
| Glyur000143s00011209.1 | PF00759.14 | Glyco_hydro_9 | 125 | 464 | 6.40E-109 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.610 |
| SRR1783600 | control | 0.665 |
| SRR1783602 | moderate drought stress | 0.310 |
| SRR1811619 | moderate drought stress | 0.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.130 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.593 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.437 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.177 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.159 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.362 |
| SRR2967015 | Control (Tissue:root) | 0.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.456 |
| SRR9715740 | Leave | 0.023 |
| SRR9715741 | Leave | 0.194 |
| SRR9715739 | Root | 0.692 |
| SRR9715742 | Root | 0.259 |
| SRR9715743 | Root | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.680 |
| SRR8749028 | MeJA induced 9h | 0.418 |
| SRR8749029 | MeJA induced 9h | 0.770 |
| SRR8749030 | Uninduced | 0.972 |
| SRR8749031 | Uninduced | 1.592 |
| SRR8749032 | Uninduced | 1.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.424 |
| SRR8400027 | Control-Root | 0.361 |