Gene detail

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Gene detail information of Glyur000143s00011212.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63970.1	2.00E-82	isoprenoid F
NR	XP_004511560.1	1.85E-136	PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cicer arietinum]
COG	YP_002730892.1	2.00E-56	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Persephonella marina EX-H1]
Swissprot	tr\|Q9M4W3\|ISPF_CATRO	9.00E-104	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|G7KC04\|G7KC04_MEDTR	5.00E-136	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256\|RuleBase:RU004395}

Sequence

Transcript Sequence

>Glyur000143s00011212.1
TTTTTTGGGGGGCTAATTTTCTAATTTGTAAATCTCAGCCGGTATTGTTCAATGCACATTGTCAATCACTCGTGTGAATCTCATCTTACACATTTCCACGCAGAATATACCATTCTGTGCCGCTCAAATAAACATATGTAGTGTCTGAATTTGTTGGTTGCCATTTCCCAGCAGCACAGTCTGAATAACGTCAACGGCTATGGCGGCATCTTCCTTTACAGCATCTTCCATCTCCTTCCCATTCAGAATAGCCACCAAATCTTCTCATCAGTTTCCCTCCTCTTGTTCTTTACCTTACAAACACCATAACCTCCTTCCCAATCTCCATCTCAAACCATTACCAACCGTCTCAGCCTCAGGGGCTGCAACTCCAGTCACCTCCATTCAAACCGACAAATCCCCAATCTCCGCCACTCCCTCCAAGGTTCTTCCTTTTCGGGTCGGGCATGGTTTTGACCTCCACAGGTTGGAGCCCGGTTACCCCTTAATCATCGGTGGAATTAACATACCCCACGAAAGAGGCTGCGAGGCTCATTCCGACGGGGATGTTCTGCTTCACTGCGTGGTAGATGCGATTTTAGGGGCGTTAGGTCTTCCGGATATAGGGCAGATATTTCCGGATTCGGATCCTAAGTGGAAGGGTTGTGACTCTTCGGTGTTCATCCAAGAATCTGTGAGGCTTATGCATGAGGCAGGGTATGACATTGGAAATTTAGATGCTACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCCGCACTGCTTGGAGTTGACTCTTCTGTGGTAAATATCAAAGCAAAAACTCATGAAAAGGTTGACAGCCTTGGAGAAAATAGAAGTATAGCGGCTCACACAGTTGTTCTTCTAATGAGGAAATGAGGGAGGAAGCTGGAAATATTATGAAGAACATGAAAGAATAAATTATGCTTTATTGCCAGTAGCGGAACTTGAACAAAAATTTAGGGGAGCCAAAATAAGATTTAATGCATAAATCAAATAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	189798	193030	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01770	ispF	EC:4.6.1.12	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0016114 terpenoid biosynthetic process

molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011212.1	PF02542.11	YgbB	79	234	5.90E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	112.341
SRR1783600	control	111.438
SRR1783602	moderate drought stress	69.300
SRR1811619	moderate drought stress	69.252

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.908
DRR006520	Root Summer glycyrrhizin high producing strain	31.041
DRR006521	Root Winter glycyrrhizin high producing strain	46.511
DRR006522	Root Winter glycyrrhizin high producing strain	44.889
DRR006523	Root Summer glycyrrhizin low producing strain	28.937
DRR006524	Root Summer glycyrrhizin low producing strain	28.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	164.972
DRR006526	Leaf Summer glycyrrhizin high producing strain	162.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	122.311
SRR2868004	Drought Stress(Tissue:root)	183.938
SRR2967015	Control (Tissue:root)	118.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	206.875
SRR9715740	Leave	212.475
SRR9715741	Leave	170.307
SRR9715739	Root	26.164
SRR9715742	Root	31.630
SRR9715743	Root	33.754

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.508
SRR8749028	MeJA induced 9h	52.427
SRR8749029	MeJA induced 9h	50.408
SRR8749030	Uninduced	140.603
SRR8749031	Uninduced	228.977
SRR8749032	Uninduced	96.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	104.728
SRR8400027	Control-Root	87.213