Gene detail information of Glyur000143s00011213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11280.1 | 4.00E-171 | 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 |
| NR | XP_003538294.1 | 0 | PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Glycine max] |
| COG | YP_004582080.1 | 9.00E-67 | 1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata] |
| Swissprot | tr|P31531|1A1C_SOYBN | 0 | 1-aminocyclopropane-1-carboxylate synthase |
| trEMBL | tr|I1LGD4|I1LGD4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G02390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 196570 | 198999 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20772 | ACS1_2_6 | EC:4.4.1.14 | Cysteine and methionine metabolism | map00270 |
| MAPK signaling pathway - plant | map04016 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011213.1 | PF00155.16 | Aminotran_1_2 | 56 | 419 | 4.70E-99 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.009 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.074 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.893 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.257 |
| SRR2967015 | Control (Tissue:root) | 1.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.633 |
| SRR9715740 | Leave | 0.170 |
| SRR9715741 | Leave | 3.285 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.577 |
| SRR9715743 | Root | 0.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.766 |
| SRR8749028 | MeJA induced 9h | 0.326 |
| SRR8749029 | MeJA induced 9h | 1.231 |
| SRR8749030 | Uninduced | 15.981 |
| SRR8749031 | Uninduced | 13.490 |
| SRR8749032 | Uninduced | 10.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.260 |
| SRR8400027 | Control-Root | 0.274 |