Gene detail information of Glyur000143s00011215.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63910.1 | 6.00E-80 | myb domain protein 103 |
| NR | XP_007158529.1 | 2.34E-165 | hypothetical protein PHAVU_002G159700g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LPH6|MYB86_ARATH | 6.00E-62 | Transcription factor MYB86 |
| trEMBL | tr|V7CMD4|V7CMD4_PHAVU | 9.00E-166 | Uncharacterized protein {ECO:0000313|EMBL:ESW30523.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 207921 | 210234 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011215.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 8.70E-15 |
| Glyur000143s00011215.1 | PF00249.26 | Myb_DNA-binding | 67 | 111 | 2.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.057 |
| SRR1783600 | control | 3.068 |
| SRR1783602 | moderate drought stress | 2.146 |
| SRR1811619 | moderate drought stress | 2.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.994 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.444 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.268 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.668 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.849 |
| SRR2967015 | Control (Tissue:root) | 7.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.542 |
| SRR9715740 | Leave | 0.255 |
| SRR9715741 | Leave | 0.262 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.823 |
| SRR9715743 | Root | 1.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.256 |
| SRR8749031 | Uninduced | 0.412 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.075 |
| SRR8400027 | Control-Root | 23.103 |