Gene detail information of Glyur000143s00011233.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61460.1 | 2.00E-47 | brassinosteroid-responsive RING-H2 |
| NR | XP_006590507.1 | 8.61E-75 | PREDICTED: RING-H2 zinc finger protein RHA1a-like [Glycine max] |
| Swissprot | tr|Q9SUS5|RHA1B_ARATH | 1.00E-25 | E3 ubiquitin-protein ligase RHA1B |
| trEMBL | tr|I1LGE4|I1LGE4_SOYBN | 3.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G02470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 283879 | 284373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011233.1 | PF13639.1 | zf-RING_2 | 82 | 126 | 3.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.069 |
| SRR1783600 | control | 6.628 |
| SRR1783602 | moderate drought stress | 11.021 |
| SRR1811619 | moderate drought stress | 10.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.747 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.618 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.451 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.435 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.538 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.130 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.854 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.484 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.139 |
| SRR2967015 | Control (Tissue:root) | 5.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.163 |
| SRR9715740 | Leave | 6.317 |
| SRR9715741 | Leave | 3.068 |
| SRR9715739 | Root | 15.501 |
| SRR9715742 | Root | 18.491 |
| SRR9715743 | Root | 17.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.254 |
| SRR8749028 | MeJA induced 9h | 0.683 |
| SRR8749029 | MeJA induced 9h | 0.205 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.526 |
| SRR8400027 | Control-Root | 10.957 |