Gene detail information of Glyur000143s00011235.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41380.1 | 3.00E-41 | CCT motif family protein |
| NR | XP_003517472.1 | 7.30E-117 | PREDICTED: uncharacterized protein LOC100798428 isoform X1 [Glycine max] |
| Swissprot | tr|Q940T9|COL4_ARATH | 1.00E-09 | Zinc finger protein CONSTANS-LIKE 4 |
| trEMBL | tr|K7K589|K7K589_SOYBN | 3.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 287632 | 289130 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011235.1 | PF06203.9 | CCT | 195 | 239 | 7.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.408 |
| SRR1783600 | control | 0.370 |
| SRR1783602 | moderate drought stress | 0.172 |
| SRR1811619 | moderate drought stress | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.654 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.645 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.103 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.106 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.819 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.086 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.765 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.420 |
| SRR2967015 | Control (Tissue:root) | 4.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.884 |
| SRR9715740 | Leave | 0.303 |
| SRR9715741 | Leave | 0.486 |
| SRR9715739 | Root | 0.461 |
| SRR9715742 | Root | 0.573 |
| SRR9715743 | Root | 0.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.240 |
| SRR8749028 | MeJA induced 9h | 1.039 |
| SRR8749029 | MeJA induced 9h | 0.855 |
| SRR8749030 | Uninduced | 1.605 |
| SRR8749031 | Uninduced | 0.280 |
| SRR8749032 | Uninduced | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.011 |
| SRR8400027 | Control-Root | 1.955 |