Gene detail information of Glyur000143s00011237.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41350.1 | 1.00E-39 | RING/U-box superfamily protein |
| NR | NP_001241561.1 | 4.95E-107 | uncharacterized protein LOC100816369 [Glycine max] |
| Swissprot | tr|Q8LE94|RING3_ARATH | 1.00E-22 | E3 ubiquitin-protein ligase At3g02290 |
| trEMBL | tr|C6TH46|C6TH46_SOYBN | 2.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G01960.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 295703 | 298531 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011237.1 | PF13639.1 | zf-RING_2 | 164 | 205 | 1.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.846 |
| SRR1783600 | control | 6.753 |
| SRR1783602 | moderate drought stress | 10.140 |
| SRR1811619 | moderate drought stress | 9.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.453 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.747 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.304 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.149 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.145 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.620 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.013 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.976 |
| SRR2967015 | Control (Tissue:root) | 14.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.521 |
| SRR9715740 | Leave | 17.575 |
| SRR9715741 | Leave | 12.683 |
| SRR9715739 | Root | 9.742 |
| SRR9715742 | Root | 10.070 |
| SRR9715743 | Root | 8.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.127 |
| SRR8749028 | MeJA induced 9h | 6.973 |
| SRR8749029 | MeJA induced 9h | 3.423 |
| SRR8749030 | Uninduced | 4.961 |
| SRR8749031 | Uninduced | 1.191 |
| SRR8749032 | Uninduced | 2.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.517 |
| SRR8400027 | Control-Root | 15.220 |