Gene detail information of Glyur000144s00012205.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02390.1 | 3.00E-163 | glycerol-3-phosphate acyltransferase 2 |
| NR | XP_004495891.1 | 0 | PREDICTED: probable glycerol-3-phosphate acyltransferase 2-like [Cicer arietinum] |
| Swissprot | tr|Q9FZ22|GPAT2_ARATH | 0 | Probable glycerol-3-phosphate acyltransferase 2 |
| trEMBL | tr|I1L7N0|I1L7N0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G01420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 29977 | 31872 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13508 | GPAT | EC:2.3.1.15 | Glycerolipid metabolism | map00561 |
| Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012205.1 | PF01553.16 | Acyltransferase | 342 | 433 | 1.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.065 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.051 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.068 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.114 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.446 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.160 |
| SRR2967015 | Control (Tissue:root) | 1.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.197 |
| SRR9715740 | Leave | 0.290 |
| SRR9715741 | Leave | 1.046 |
| SRR9715739 | Root | 0.030 |
| SRR9715742 | Root | 0.900 |
| SRR9715743 | Root | 0.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.236 |
| SRR8749028 | MeJA induced 9h | 0.163 |
| SRR8749029 | MeJA induced 9h | 0.686 |
| SRR8749030 | Uninduced | 0.591 |
| SRR8749031 | Uninduced | 0.420 |
| SRR8749032 | Uninduced | 3.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.128 |
| SRR8400027 | Control-Root | 0.016 |