Gene detail information of Glyur000144s00012206.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62310.10RNA helicase family protein
NRXP_003591371.10ATP-dependent RNA helicase-like protein [Medicago truncatula]
COGYP_003526829.11.00E-137ATP-dependent helicase HrpA [Nitrosococcus halophilus Nc 4]
Swissprottr|O22899|DHX15_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|G7ICV1|G7ICV1_MEDTR0Pre-mRNA splicing factor ATP-dependent RNA helicase {ECO:0000313|EMBL:AES61622.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001443707241804+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12820DHX15, PRP43 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000144s00012206.1PF00270.24DEAD622213.20E-07
Glyur000144s00012206.1PF00271.26Helicase_C3053995.20E-10
Glyur000144s00012206.1PF04408.18HA24625516.00E-28
Glyur000144s00012206.1PF07717.11OB_NTP_bind5856883.70E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.038
SRR1783600control30.316
SRR1783602moderate drought stress28.405
SRR1811619moderate drought stress28.215

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.863
DRR006520Root Summer glycyrrhizin high producing strain37.553
DRR006521Root Winter glycyrrhizin high producing strain52.709
DRR006522Root Winter glycyrrhizin high producing strain50.750
DRR006523Root Summer glycyrrhizin low producing strain36.229
DRR006524Root Summer glycyrrhizin low producing strain36.243
DRR006525Leaf Summer glycyrrhizin high producing strain21.414
DRR006526Leaf Summer glycyrrhizin high producing strain21.522

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)66.843
SRR2868004Drought Stress(Tissue:root)62.011
SRR2967015Control (Tissue:root)62.201

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.822
SRR9715740Leave37.672
SRR9715741Leave40.425
SRR9715739Root11.928
SRR9715742Root46.325
SRR9715743Root41.425

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.189
SRR8749028MeJA induced 9h38.597
SRR8749029MeJA induced 9h26.871
SRR8749030Uninduced15.717
SRR8749031Uninduced14.574
SRR8749032Uninduced13.871

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.767
SRR8400027Control-Root50.773

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved