Gene detail information of Glyur000144s00012207.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47240.20AMP-dependent synthetase and ligase family protein
NRXP_003535896.10PREDICTED: long chain acyl-CoA synthetase 1-like isoform X1 [Glycine max]
COGYP_004721504.18.00E-50AMP-dependent synthetase and ligase [Sulfobacillus acidophilus TPY]
Swissprottr|O22898|LACS1_ARATH0Long chain acyl-CoA synthetase 1
trEMBLtr|I1L7M8|I1L7M8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G01400.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001444382549106-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000144s00012207.1PF00501.23AMP-binding524561.20E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.098
SRR1783600control1.010
SRR1783602moderate drought stress1.004
SRR1811619moderate drought stress1.015

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.597
DRR006520Root Summer glycyrrhizin high producing strain1.486
DRR006521Root Winter glycyrrhizin high producing strain0.174
DRR006522Root Winter glycyrrhizin high producing strain0.210
DRR006523Root Summer glycyrrhizin low producing strain1.086
DRR006524Root Summer glycyrrhizin low producing strain1.156
DRR006525Leaf Summer glycyrrhizin high producing strain18.670
DRR006526Leaf Summer glycyrrhizin high producing strain16.977

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.624
SRR2868004Drought Stress(Tissue:root)5.984
SRR2967015Control (Tissue:root)2.703

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave92.014
SRR9715740Leave50.823
SRR9715741Leave92.531
SRR9715739Root0.600
SRR9715742Root4.123
SRR9715743Root3.049

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.133
SRR8749028MeJA induced 9h0.047
SRR8749029MeJA induced 9h0.083
SRR8749030Uninduced0.248
SRR8749031Uninduced0.385
SRR8749032Uninduced0.165

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.858
SRR8400027Control-Root5.528

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved