Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000144s00012216.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19730.1	2.00E-67	Pectin lyase-like superfamily protein
NR	XP_011040796.1	2.80E-162	PREDICTED: probable pectinesterase 53 [Populus euphratica]
COG	YP_003997686.1	9.00E-47	pectinesterase [Leadbetterella byssophila DSM 17132]
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	1.00E-79	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|V7BGX8\|V7BGX8_PHAVU	4.00E-161	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000144s00012216.1
ATGGTTCCTCCCAGCAGAACCCATTTCCAATTCCAAGTCATTCTATTACTTCTTTCNTCATCGTTGTACTTCAACACTTCCAGGTCAGATATGCAGGCCGATTTTGACAAGTGGATATCTTGGAACGTCAAGANTCACCAGAAAAAGACCATTTTGGGAACCAAATTGAATGTCACTGCCAATGGGCAGGCTCTTGATTTGATGCTGAGGCAGGCTGANAGTAACAGAGTTAGAATAACAGTAAGCCAAGACGGTGCTGGTGACTTCAAGACCATTACCGAAGCTCTTAACAGCATTCCACCACGCAACACTAGGAGAGTTATAGTGTTGATTGCGCCAGGTGTTTATAGGGAGAAAGTGATGATCCCCAGAACACTGCCTTTCATTACATTATTAGGGGACGCCAGGGATCCACCAACCATTACTGGAAATGATACAGCGTCTGTCACGGGAAGAGGTGGGACTCCTTTGGGGACGTTCCAGAGTGCAACTGTTGCCGTGGATGCTAGCTATTTTATGGCCATCAACGTCAAATTTGAGAACACTGCTCCGCATGTGATTGGATCGGTGGGGGAGCAAGCGGCGGCGCTACGCATCTCAGGAACCAAAGCTGCTTTTTACAACTGCACTTTCTATGGGGCTCAAGACACTCTATATGATCACAAGGGCCTTCACTACTTCAACAATTGCTTCATTCAGGGCTCTGTTGATTTCATCTTCGGCTCCGGGAGGTCCCTTTACGAGCTCTATCTAAATTCCATAACCAAGAAGGTGGCCTCCATCACTGCTCAAAAGCGTACAAATTCATCATTGGAGAGTGGATTTTCGTTCAAGAACAGTGTAGTAACAGGTAGTGGGCAGGTTTATCTTGGAAGGGCATGGGGAGATTACTCCAGAGTTGTTTTCTCTTACACCTACATGGACAAGATTGTTCACCCCAAAGGGTGGAGTGATTGGGGTGACCAAAAGCGTGACCTGTTAGTAATACNACATCGCAGCATAGTTGGAATCGTTTGCCACAAAATTATGCAATTCAATGAAGAGCTGATTAATTATGTGCTTGATGGTATATTACGGAGNGTACAAGTGCAGTGGGCCCGGAGCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	85490	87822	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012216.1	PF01095.14	Pectinesterase	79	322	2.90E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.345
SRR1783600	control	0.512
SRR1783602	moderate drought stress	0.811
SRR1811619	moderate drought stress	0.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.586
DRR006520	Root Summer glycyrrhizin high producing strain	0.617
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.421
DRR006524	Root Summer glycyrrhizin low producing strain	0.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.931
SRR2868004	Drought Stress(Tissue:root)	14.984
SRR2967015	Control (Tissue:root)	3.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.181
SRR9715740	Leave	0.000
SRR9715741	Leave	0.282
SRR9715739	Root	0.034
SRR9715742	Root	0.101
SRR9715743	Root	0.109

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.106
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.114
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.056
SRR8400027	Control-Root	0.754