Gene detail information of Glyur000144s00012217.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47190.1 | 2.00E-53 | myb domain protein 2 |
| NR | AHY94990.1 | 2.11E-116 | MYB2 [Medicago sativa] |
| Swissprot | tr|Q9LDE1|MY108_ARATH | 5.00E-60 | Transcription factor MYB108 |
| trEMBL | tr|A0A024A419|A0A024A419_MEDSA | 8.00E-117 | MYB2 {ECO:0000313|EMBL:AHY94990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 95073 | 96182 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012217.1 | PF00249.26 | Myb_DNA-binding | 35 | 72 | 2.10E-07 |
| Glyur000144s00012217.1 | PF00249.26 | Myb_DNA-binding | 78 | 121 | 3.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.916 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.802 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.390 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.208 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.448 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.480 |
| SRR2967015 | Control (Tissue:root) | 2.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.214 |
| SRR9715740 | Leave | 0.095 |
| SRR9715741 | Leave | 1.644 |
| SRR9715739 | Root | 0.270 |
| SRR9715742 | Root | 2.735 |
| SRR9715743 | Root | 2.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.374 |
| SRR8749028 | MeJA induced 9h | 34.597 |
| SRR8749029 | MeJA induced 9h | 14.766 |
| SRR8749030 | Uninduced | 49.226 |
| SRR8749031 | Uninduced | 15.875 |
| SRR8749032 | Uninduced | 37.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.622 |
| SRR8400027 | Control-Root | 1.608 |