Gene detail

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Gene detail information of Glyur000144s00012226.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02460.1	2.00E-87	Pectin lyase-like superfamily protein
NR	XP_004495880.1	3.96E-161	PREDICTED: polygalacturonase At1g48100-like [Cicer arietinum]
COG	YP_001179193.1	4.00E-16	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q949Z1\|PGLR4_ARATH	2.00E-90	Polygalacturonase At1g48100 (Precursor)
trEMBL	tr\|V7BKM1\|V7BKM1_PHAVU	2.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:ESW17111.1}

Sequence

Transcript Sequence

>Glyur000144s00012226.1
CAGATTATCCTAGCAAATCCCTTGTTGTTGTAGGACAGAGAAATAATTATATATTATAGTTATGGGAAGAACATGAGAGGCTTGTCCACTAGCCGCATCCTGACTTCTGGTTATTCCCTTTTGCTCTTTTGAGAAATGTTAAATGCAGACTCCACAATCTCAAAAGGAAGGCCAATGCCTATGAGATATTTGTCGGTTCCCACTTCTAAACCCATTAAAAAATTGGTAACGTGCAGATGAAACTNACCACATTGTCCACTAAAGCTTGTTATTATATATAGTAACTCAGCCTTTCTGATTTCTGCATGTACTCACTCCCAAGAGCCCAACTCAGTTTATAAAATTGTTCAGCAACTTGTGTTGACAGCCACAAAGCCAATTGGTGTCTCAAATTTTTCATATTTTTAGTACAAACTATCCTCTTAATTTCCCTCTTTTCTGTTTTCACTTCTTATTAGTAGAAACTACTCAGAATGAGGCACTCTCCTATTTTACCACTATCAATATTCACTATATATTTTCTTACTCTATTTCTTTCCACCGAAGCTAGACACTACTTCCATAGAAAACACAACAAGCACTCACATTCTCACAATTCACCTGGGATTTCACTACCTCCTGCTCCAATGCCTTCACCTTCTAACCCTCCTGAAGATGCTCCTAGTCCTAGCCCCCCTAATGATGAGAATTACCATAATAATGCATCGGGGTTATTCGATGTAAGAACATTTGGGGCCATTGGGGATGGAATAACCGATGATACAGAGTCATTCAAGATGGCATGGGACAGTGCCTGTCAAAGTGAATCAGCAGTTAATGTTATCCTCGTACCTCATGGTTTCTCCTTCATTATTCAATCTACTATCTTCACAGGTCCTTGTCAAAGTGGTTTAGTACTAAAGAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGAATCCTGGCCAAAGAACACTACTAGGCGTCAATGGCTGGTGTTTTATAGAGTCAATGGAATGTCACTNGAAGGAAGTGGTTTAATAGATGGGAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGACCTCATGGGTCAACACTACCAGGACCTTGTGACAGCCCAATTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTAAGGATCAAAAACAGCCCACAATTTCATTTCAGATTTGATGGCTGCCGAAGCGTCCACGTGGAATCAATCTTCATTACAGCTCCAGCACTTAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAAAATATATAATTCTGTCATTTCCAATGGTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	154667	156271	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012226.1	PF00295.12	Glyco_hydro_28	108	285	1.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.920
SRR1783600	control	4.962
SRR1783602	moderate drought stress	8.001
SRR1811619	moderate drought stress	7.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.393
DRR006520	Root Summer glycyrrhizin high producing strain	15.193
DRR006521	Root Winter glycyrrhizin high producing strain	0.083
DRR006522	Root Winter glycyrrhizin high producing strain	0.082
DRR006523	Root Summer glycyrrhizin low producing strain	5.354
DRR006524	Root Summer glycyrrhizin low producing strain	5.318
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.069
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	15.716
SRR2868004	Drought Stress(Tissue:root)	22.897
SRR2967015	Control (Tissue:root)	24.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.109
SRR9715740	Leave	0.048
SRR9715741	Leave	0.196
SRR9715739	Root	3.127
SRR9715742	Root	10.056
SRR9715743	Root	10.856

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.160
SRR8749028	MeJA induced 9h	0.318
SRR8749029	MeJA induced 9h	0.183
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.735
SRR8400027	Control-Root	13.609