Gene detail

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Gene detail information of Glyur000144s00012238.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02500.2	0	S-adenosylmethionine synthetase 1
NR	KHN14160.1	0	S-adenosylmethionine synthase 1 [Glycine soja]
COG	YP_004983609.1	2.00E-159	S-adenosylmethionine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|A9P822\|METK1_POPTR	0	S-adenosylmethionine synthase 1
trEMBL	tr\|I1JQV8\|I1JQV8_SOYBN	0	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}

Sequence

Transcript Sequence

>Glyur000144s00012238.1
CCGGCAACACGTCACGAATTTATGCTTACGCAATTATTGGAGGAAGGAAAGAACCGCTTCATATTTACTATTTCTACAGTAGCGAATCACATCCCGTCATCCGGCCGTCAAATCTGACGGCTACACATTCTTGACGACCACNGTTTCCGGTACCCGGTCACGCGTGCGGTTTATTGATATCTATAAGTAGAGTCTCTCTCTNTCCATTAGAGCTCGTGCCTCTCTTCTCCCCATTTACTTGAATCCCCATACCATAAGCGAGTCCTCTGATCTGATCCTCTCTATTCCGGAGTTTCCATTCCATCCCCAACTCACTACAGTTCAAGAAATGGCGAGAGAGACCTTTCTGTTCACCTCTGAATCCGTCAACGAGGGTCACCCTGACAAGCTTTGCGATCAGGTCTCTGATGCAGTGCTTGATGCCTGCCTCGAGCAGGATCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGAGAGATTACAACCAAGGCCAACGTAGACTATGAGAAGATTGTTCGTGACACATGCCGCAACATTGGATTTGTCTCTGCTGATGTGGGTCTTGATGCTGACAAATGCAATGTCTTGGTCAACATTGAGCAGCAGAGCCCTGATATTGCACAGGGTGTCCATGGCCACTTCACCAAGCGCCCAGAGGAGATTGGTGCAGGTGACCAGGGTCACATGTTTGGGTATGCCACTGATGAAACCCCTGAATACATGCCATTGAGCCATGTGCTAGCAACAAAACTAGGAGCTCGCCTTACTGAGGTTAGGAAGAATGGTACCTGCCCTTGGGTGAGACCAGACGGCAAGACACAAGTAACAGTTGAGTACTACGATGACAATGGTGCTATGGTTCCTATTCGAGTCCACACTGTCCTCATTTCAACTCAGCATGATGAAGGTGTCACTAATGATCAAATTGCTGCGGATCTTAAGGAGCATGTTATCAAGGCAGTTATTCCTGCGAAGTACTTAGATGACAATACCATCTTCCACCTTAACCCATCTGGTCGATTTGTCATTGGTGGGCCTCATGGTGATGCTGGTCTCACTGGAAGGAAGATCATCATTGATACTTATGGTGGCTGGGGTGCCCATGGAGGTGGTGCTTTCTCAGGAAAGGACCCTACTAAGGTTGACCGTAGTGGTGCCTATGTTGCCAGGCAGGCAGCAAAGAGTGTTGTGGCAAATGGGCTTGCTNGCAGGTGCATTGTTCAAGTTTCTTATGCCATTGGTGTTCCTGAGCCATTGTCTGTCTTTATTAATACTTTTAAGACTGGAAAGATTCCAGACAAGGAGATTCTTCAAATTGTGAAGGAGAACTTTGACTTTAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGCAATAGGTTCCTCAAGACAGCAGCCTATGGACACTTTGGAAGGGATGACACAGACTTCACCTGGGAAGTTGTGAAGCCCCTCAAATGGGAGAAGCCTCAAGCTTAAGGTTTTTATATTTGACAACTGGGAGGAAATTTTAATAGGGTAACATTTCATGTAGTAGAAGTTGGATTATAATTTACTTTTCTATTTGTTTTCTATGTTTAGTTACAGGGGGTAATTTCTACCCATTAAAATTTATGTGTCTTGGCGCTCAAATAAAAATTTATATTGTCAAATTGTTTTTCATGTCTACATTTACATATTGGACAATCAGTTTTTCATGTATGAAATTAAATTATAGGTTCAAATCTCATTGTTATTATTGCACCAACACATTAATTTTGAGTCGGAAACCATAATAAGTTTGACCCTAAATTTTGTTAGTCCAAGCCAACCCATGTTTATCAGGCCAAATAGGTCAATCCATCAGTCTTTTGACTTTGACACCCGTACTAANAGCCATCCACTCAACTCTGCTTGTGTATTCAGTGATATGATNTGATTAACAAAACATATCAATTTACCAACAAAAAAAAAAGAGAACATATCAAAAACTCTGCGGTAAGTTCATTTGGCCTCTGAACTTCAAGGTTGCTTCTAGGGTGGACTATCTTTGTGGGTGGTTTATGATGAACCACTAACTATCAAATTTTTACAAAATTTTAATAGCTGCTAGATTTATTGATAAAAAATTCAATGACTCAGATTAATTGAAAATAAAGAGAGAACAAATGAAANCTACCTTACACAATCCCTACCCCATCCCACTCCACTCCACCCCATCTGCTCAACGCACAACCTCTGTTTCGTGTTGTTTTTCATCTTCTTCCTCTTCTCCTTCCAAATCCAACAATGGACTCCCCACATCATATCCCTTTCATCCCAATACACACCATTCCTCCATCATCTACCATAATCTTCAAAACTAGCAAAAACTTTCCTCCACTAAGATGATTTTGAGCTTAAACTAATCTATATCCTAAAGAAAAATAAACTACAACCAGAGATACCGGAGTGGAAAGAAAAATATGGGTTATGGTTACATTGGGTTTTCTTCATAGTGATAATAATAACCATACTGGGTAGNGTTTGTTTTGGTGGGTTTTGCATAAAGTTTTGATTTGTTCTTTCTGGGTTTTGAAAATGTGGAGTAGGTGGTATCTTNTGTTTTCAATGGAAGCCATGGTTATGTGGGAAAGCTTCATCCTTTTGATCCTCTTCTNTTGGGTTTGAGGGATTTTGCANTGGAATGTGGTGGTGTTTCTCGGTGGTTCTCTGATTCTCTTGTTCGANGTGTTTCGNGGAGGGGACGTCACCGGTTGTGGTACAGTGAAGCCTCTGTAAGTGGAGGTGGATCCGACATGGGTGGTGGTGGGAAGGGATGCGCCGTCGCNACGNTCCTCCGGTCGAGCCGAGGGCGGTCCTCTCCGTCTTCGCCCAACACTCGTCGCAAGCTGGCTGGGATATATGATTTGGTGTAGAGGATGCACTNTAAGATCTTGTGAGACTAATCAATCCAATGNTTATAATTAATGTAATTATTTTCACTCAAANTTCACCACGGTGAACCACCTATTTGGTGGTTCACCCTAGACAGAGCCGAACTTCAAATCAAACTAAAACTGTCTTAGGCAACAAACCCAGAATGGAAAGTTTTATCTGAATATATGCTTTCACTTGAAAATTATTGTCATAAATTAGGGCGAAATTTATTAAGCACAAGGATGCAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	210957	215011	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00789	metK	EC:2.5.1.6	Biosynthesis of amino acids	map01230
K00789	metK	EC:2.5.1.6	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006556 S-adenosylmethionine biosynthetic process

molecular_function GO:0004478 methionine adenosyltransferase activity GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012238.1	PF00438.15	S-AdoMet_synt_N	5	103	6.60E-42
Glyur000144s00012238.1	PF02772.11	S-AdoMet_synt_M	118	240	2.90E-48
Glyur000144s00012238.1	PF02773.11	S-AdoMet_synt_C	242	382	1.60E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.724
SRR1783600	control	28.765
SRR1783602	moderate drought stress	8.893
SRR1811619	moderate drought stress	8.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	92.561
DRR006520	Root Summer glycyrrhizin high producing strain	91.731
DRR006521	Root Winter glycyrrhizin high producing strain	5.560
DRR006522	Root Winter glycyrrhizin high producing strain	5.517
DRR006523	Root Summer glycyrrhizin low producing strain	277.787
DRR006524	Root Summer glycyrrhizin low producing strain	278.313
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	44.123
SRR2868004	Drought Stress(Tissue:root)	47.106
SRR2967015	Control (Tissue:root)	63.230

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	335.170
SRR9715740	Leave	116.046
SRR9715741	Leave	420.660
SRR9715739	Root	387.852
SRR9715742	Root	447.866
SRR9715743	Root	427.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	366.375
SRR8749028	MeJA induced 9h	294.921
SRR8749029	MeJA induced 9h	379.220
SRR8749030	Uninduced	500.970
SRR8749031	Uninduced	136.947
SRR8749032	Uninduced	418.937

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	37.468
SRR8400027	Control-Root	96.573