Gene detail information of Glyur000144s00012240.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47070.1 | 0 | squamosa promoter binding protein-like 1 |
| NR | XP_003518623.1 | 0 | PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max] |
| Swissprot | tr|Q9SMX9|SPL1_ARATH | 0 | Squamosa promoter-binding-like protein 1 |
| trEMBL | tr|I1JBB8|I1JBB8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G01160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 215418 | 222772 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
| EAR motif-containing Proteins | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012240.1 | PF03110.9 | SBP | 156 | 233 | 1.40E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.854 |
| SRR1783600 | control | 39.883 |
| SRR1783602 | moderate drought stress | 46.602 |
| SRR1811619 | moderate drought stress | 46.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.694 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.779 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.708 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.633 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 69.742 |
| SRR2868004 | Drought Stress(Tissue:root) | 81.104 |
| SRR2967015 | Control (Tissue:root) | 77.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 59.955 |
| SRR9715740 | Leave | 61.104 |
| SRR9715741 | Leave | 70.095 |
| SRR9715739 | Root | 18.183 |
| SRR9715742 | Root | 85.454 |
| SRR9715743 | Root | 71.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.791 |
| SRR8749028 | MeJA induced 9h | 42.566 |
| SRR8749029 | MeJA induced 9h | 23.551 |
| SRR8749030 | Uninduced | 16.969 |
| SRR8749031 | Uninduced | 9.581 |
| SRR8749032 | Uninduced | 9.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 65.248 |
| SRR8400027 | Control-Root | 68.442 |