Gene detail information of Glyur000144s00012242.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02810.1 | 4.00E-64 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | KHN23786.1 | 3.71E-154 | Putative pectinesterase/pectinesterase inhibitor 21 [Glycine soja] |
| COG | YP_003404589.1 | 1.00E-36 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|P83218|PME_DAUCA | 1.00E-74 | Pectinesterase |
| trEMBL | tr|I1JBB5|I1JBB5_SOYBN | 6.00E-133 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 239981 | 253898 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012242.1 | PF04043.10 | PMEI | 37 | 196 | 1.60E-27 |
| Glyur000144s00012242.1 | PF01095.14 | Pectinesterase | 222 | 431 | 4.50E-95 |
| Glyur000144s00012242.1 | PF04043.10 | PMEI | 490 | 626 | 6.90E-22 |
| Glyur000144s00012242.1 | PF01095.14 | Pectinesterase | 624 | 841 | 2.20E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.014 |
| SRR1811619 | moderate drought stress | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.013 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.056 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.435 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.863 |
| SRR9715739 | Root | 0.039 |
| SRR9715742 | Root | 0.170 |
| SRR9715743 | Root | 0.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.125 |
| SRR8749028 | MeJA induced 9h | 0.043 |
| SRR8749029 | MeJA induced 9h | 0.041 |
| SRR8749030 | Uninduced | 0.075 |
| SRR8749031 | Uninduced | 0.127 |
| SRR8749032 | Uninduced | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.006 |
| SRR8400027 | Control-Root | 0.000 |