Gene detail

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Gene detail information of Glyur000145s00010118.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20530.1	3.00E-146	Protein kinase superfamily protein
NR	XP_006595742.1	0	PREDICTED: serine/threonine-protein kinase PBS1-like [Glycine max]
COG	YP_001958461.1	6.00E-27	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	1.00E-160	Serine/threonine-protein kinase PBS1
trEMBL	tr\|K7M4K5\|K7M4K5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02850.2}

Sequence

Transcript Sequence

>Glyur000145s00010118.1
ATGCAAGAACTTTGCAATTTTGTGATGTGGGCTTGGTCAAATCAAATATTTAGGGAGTGGAAAATGAGTTTCTTTTCTTGTTGTACGTCACANGAGAAGAACACCAAGAACTCATTGAAGAAGAGCCTTAAGGAGTATCATACCGATAGCAGCAAGCGGAAGTACATAGAGGAAGAAATTAGAAAAGCTGGGAAAGGGAATATTTCCTCTCAGATTTTTTCTTATCACGAGCTATCTGTTGCAACTAAGAACTTCCACCCTAACAACNTGATTGGTGAAGGAGGCTTTGGGAGAGTATACAAAGGATACATTAAAAGCATAGATAAGGTTGTTGCTGTGAAGCAACTTAACAGGAATGGACTCCAAGGAAGCAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTCTTAGGACACCCTAACCTTGTCAAATTGATAGGGTATTGTGCTGATGGTGATCAGAGGGTTTTGGTATATGAGTACATGGTGAATGGTTCTTTAGAAGATCACCTTCTTGAGTTGCCTCCGAACAGAAAGCCCTTGGACTGGCATACTAGAATGAAAATTGCAGAAGGTGCAGCAAGAGGACTTAAATACTTACATGTAGAAGCAAATCCGCCAGTGATATATCGCGATTTTAAAGCATCAAACATACTATTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAGACACANGTATCAACCAGGGTGATGGGAACTTATGGCTATTGTGCTCCTGAGTATGCCTTAACAGGTAAATTGACCACAAAATCAGATGTATACAGCTTTGGAGTGGTGTTTTTAGAGATGATCACAGGGAGAAGAGTACTTGATTATTCAAGANCAACTGAAGAGCAAAATTTAGTCACTTGGGCACAACCACTGTTCAGAGATAGAAGGAAAATTTCAGAAATGGCTGATCCATTGCTAAAAGGGAACTACCCAGTAAAGGGTCTATACCAAGCACTAGCAATTGCAGCAATGTGTGTTCAGGAGGAAGCTGATGCTCGACCTTTGATTATGGACGTAGTTATAGCTCTTGGAGCTTTAGCAAAGAAAGAAGCATTTACAAGTGGGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	45920	48660	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010118.1	PF00069.20	Pkinase	88	301	1.10E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.048
SRR1783600	control	0.049
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.056
DRR006521	Root Winter glycyrrhizin high producing strain	0.227
DRR006522	Root Winter glycyrrhizin high producing strain	0.333
DRR006523	Root Summer glycyrrhizin low producing strain	0.196
DRR006524	Root Summer glycyrrhizin low producing strain	0.189
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.665
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.612
SRR2868004	Drought Stress(Tissue:root)	5.009
SRR2967015	Control (Tissue:root)	3.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.968
SRR9715740	Leave	3.219
SRR9715741	Leave	5.336
SRR9715739	Root	0.004
SRR9715742	Root	0.055
SRR9715743	Root	0.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.650
SRR8749028	MeJA induced 9h	0.263
SRR8749029	MeJA induced 9h	0.737
SRR8749030	Uninduced	1.609
SRR8749031	Uninduced	0.978
SRR8749032	Uninduced	0.647

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.170
SRR8400027	Control-Root	0.202