Gene detail information of Glyur000145s00010119.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50840.10polymerase gamma 2
NRXP_004491363.10PREDICTED: uncharacterized protein LOC101490997 [Cicer arietinum]
COGYP_001680329.11.00E-50DNA polymerase i [Heliobacterium modesticaldum Ice1]
Swissprottr|F4I6M1|POLIA_ARATH0DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBLtr|G7K3G7|G7K3G7_MEDTR0PolI-like B DNA polymerase {ECO:0000313|EMBL:AET00445.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001454992456100+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02335DPO1, polA EC:2.7.7.7 Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Homologous recombinationmap03440


Gene Ontology

biological_process

GO:0006139  nucleobase-containing compound metabolic process

GO:0006260  DNA replication

GO:0006261  DNA-dependent DNA replication


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0008408  3'-5' exonuclease activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000145s00010119.1PF01612.15DNA_pol_A_exo13435382.30E-12
Glyur000145s00010119.1PF00476.15DNA_pol_A76010972.20E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.337
SRR1783600control2.332
SRR1783602moderate drought stress2.478
SRR1811619moderate drought stress2.489

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.414
DRR006520Root Summer glycyrrhizin high producing strain4.367
DRR006521Root Winter glycyrrhizin high producing strain2.480
DRR006522Root Winter glycyrrhizin high producing strain2.462
DRR006523Root Summer glycyrrhizin low producing strain2.422
DRR006524Root Summer glycyrrhizin low producing strain2.391
DRR006525Leaf Summer glycyrrhizin high producing strain7.596
DRR006526Leaf Summer glycyrrhizin high producing strain7.555

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.854
SRR2868004Drought Stress(Tissue:root)6.392
SRR2967015Control (Tissue:root)5.826

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.837
SRR9715740Leave13.743
SRR9715741Leave9.319
SRR9715739Root0.743
SRR9715742Root4.544
SRR9715743Root4.859

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.293
SRR8749028MeJA induced 9h4.265
SRR8749029MeJA induced 9h3.197
SRR8749030Uninduced1.078
SRR8749031Uninduced0.971
SRR8749032Uninduced1.320

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.329
SRR8400027Control-Root6.722

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved