Gene detail information of Glyur000145s00010133.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17540.1 | 2.00E-05 | F-box and associated interaction domains-containing protein |
| NR | KEH34218.1 | 1.68E-22 | F-box and associated interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SZ95|FB224_ARATH | 1.00E-06 | Putative F-box protein At4g09790 |
| trEMBL | tr|A0A072UYM2|A0A072UYM2_MEDTR | 6.00E-23 | F-box and associated interaction domain protein {ECO:0000313|EMBL:KEH34218.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00145 | 105754 | 111814 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000145s00010133.1 | PF00646.28 | F-box | 443 | 483 | 6.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.083 |
| SRR1783600 | control | 3.988 |
| SRR1783602 | moderate drought stress | 7.475 |
| SRR1811619 | moderate drought stress | 7.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.540 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.693 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.564 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.388 |
| SRR2967015 | Control (Tissue:root) | 0.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.783 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.978 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.004 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.003 |
| SRR8749032 | Uninduced | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.111 |
| SRR8400027 | Control-Root | 2.387 |