Gene detail information of Glyur000145s00010150.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58780.11.00E-65K-box region and MADS-box transcription factor family protein
NRXP_003545122.18.99E-123PREDICTED: agamous-like MADS-box protein AGL5-like isoform X1 [Glycine max]
Swissprottr|P29381|AGL1_ARATH1.00E-96Agamous-like MADS-box protein AGL1
trEMBLtr|I1M6W3|I1M6W3_SOYBN3.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G03100.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00145233448239740+


Gene family

Gene familysubfamily
Transcription Factors FamilyMIKC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000145s00010150.1PF00319.13SRF-TF43927.40E-28
Glyur000145s00010150.1PF01486.12K-box1111992.00E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.725
SRR1783600control16.823
SRR1783602moderate drought stress13.877
SRR1811619moderate drought stress14.210

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.117
DRR006520Root Summer glycyrrhizin high producing strain25.872
DRR006521Root Winter glycyrrhizin high producing strain8.393
DRR006522Root Winter glycyrrhizin high producing strain8.045
DRR006523Root Summer glycyrrhizin low producing strain2.829
DRR006524Root Summer glycyrrhizin low producing strain2.985
DRR006525Leaf Summer glycyrrhizin high producing strain2.983
DRR006526Leaf Summer glycyrrhizin high producing strain2.778

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.605
SRR2868004Drought Stress(Tissue:root)0.696
SRR2967015Control (Tissue:root)0.365

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.393
SRR9715740Leave1.004
SRR9715741Leave1.011
SRR9715739Root1.827
SRR9715742Root2.183
SRR9715743Root3.065

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.301
SRR8749028MeJA induced 9h0.546
SRR8749029MeJA induced 9h2.957
SRR8749030Uninduced0.084
SRR8749031Uninduced0.096
SRR8749032Uninduced0.425

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.425
SRR8400027Control-Root6.070

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved