Gene detail information of Glyur000145s00010160.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23730.1 | 1.00E-66 | xyloglucan endotransglucosylase/hydrolase 16 |
| NR | XP_004517201.1 | 7.25E-132 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 16-like [Cicer arietinum] |
| COG | YP_004642276.1 | 9.00E-17 | protein GluB [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|P35694|XTH2_SOYBN | 3.00E-87 | Xyloglucan endotransglucosylase/hydrolase 2 {ECO:0000250|UniProtKB:Q38857} (Precursor) |
| trEMBL | tr|I1N0W4|I1N0W4_SOYBN | 4.00E-127 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00145 | 288393 | 289845 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000145s00010160.1 | PF00722.16 | Glyco_hydro_16 | 30 | 198 | 3.30E-49 |
| Glyur000145s00010160.1 | PF06955.7 | XET_C | 197 | 230 | 5.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.148 |
| SRR1783600 | control | 0.138 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.073 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.255 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.663 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.396 |
| SRR2967015 | Control (Tissue:root) | 0.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.080 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.160 |
| SRR8400027 | Control-Root | 0.196 |