Gene detail information of Glyur000146s00016278.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13740.1 | 4.00E-36 | ABI five binding protein 2 |
| NR | KEH27866.1 | 2.96E-157 | ninja-family protein AFP1 [Medicago truncatula] |
| Swissprot | tr|Q9LQ98|AFP1_ARATH | 2.00E-74 | Ninja-family protein AFP1 |
| trEMBL | tr|A0A072UEP6|A0A072UEP6_MEDTR | 1.00E-157 | Ninja-family protein AFP1 {ECO:0000313|EMBL:KEH27866.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00146 | 816 | 5620 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000146s00016278.1 | PF07897.6 | DUF1675 | 65 | 381 | 1.20E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.178 |
| SRR1783600 | control | 5.227 |
| SRR1783602 | moderate drought stress | 6.139 |
| SRR1811619 | moderate drought stress | 6.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.709 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.182 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.885 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.059 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.173 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.145 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.166 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.082 |
| SRR2967015 | Control (Tissue:root) | 9.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.353 |
| SRR9715740 | Leave | 3.193 |
| SRR9715741 | Leave | 4.222 |
| SRR9715739 | Root | 2.572 |
| SRR9715742 | Root | 10.734 |
| SRR9715743 | Root | 8.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.013 |
| SRR8749028 | MeJA induced 9h | 16.526 |
| SRR8749029 | MeJA induced 9h | 11.127 |
| SRR8749030 | Uninduced | 4.819 |
| SRR8749031 | Uninduced | 5.530 |
| SRR8749032 | Uninduced | 2.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.135 |
| SRR8400027 | Control-Root | 11.651 |