Gene detail information of Glyur000146s00016297.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18650.1 | 4.00E-27 | plasmodesmata callose-binding protein 3 |
| NR | XP_007157837.1 | 4.44E-68 | hypothetical protein PHAVU_002G102400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FZ86|PDCB3_ARATH | 7.00E-41 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor) |
| trEMBL | tr|V7CLQ5|V7CLQ5_PHAVU | 2.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:ESW29831.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00146 | 131527 | 133854 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000146s00016297.1 | PF07983.8 | X8 | 22 | 92 | 5.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 122.813 |
| SRR1783600 | control | 122.464 |
| SRR1783602 | moderate drought stress | 190.923 |
| SRR1811619 | moderate drought stress | 193.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 166.762 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 161.121 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.671 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 83.889 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 113.908 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 110.977 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.163 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 87.134 |
| SRR2868004 | Drought Stress(Tissue:root) | 52.044 |
| SRR2967015 | Control (Tissue:root) | 61.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.742 |
| SRR9715740 | Leave | 37.959 |
| SRR9715741 | Leave | 24.147 |
| SRR9715739 | Root | 100.087 |
| SRR9715742 | Root | 64.014 |
| SRR9715743 | Root | 66.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 130.980 |
| SRR8749028 | MeJA induced 9h | 44.016 |
| SRR8749029 | MeJA induced 9h | 67.762 |
| SRR8749030 | Uninduced | 9.457 |
| SRR8749031 | Uninduced | 4.865 |
| SRR8749032 | Uninduced | 7.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 117.307 |
| SRR8400027 | Control-Root | 110.382 |