Gene detail information of Glyur000147s00013840.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16600.1 | 2.00E-72 | myb domain protein 43 |
| NR | AFK47512.1 | 4.05E-156 | unknown [Lotus japonicus] |
| Swissprot | tr|Q50EX6|ODO1_PETHY | 2.00E-85 | Protein ODORANT1 |
| trEMBL | tr|I3T4S0|I3T4S0_LOTJA | 2.00E-156 | Uncharacterized protein {ECO:0000313|EMBL:AFK47512.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 81953 | 84726 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000147s00013840.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 6.60E-13 |
| Glyur000147s00013840.1 | PF00249.26 | Myb_DNA-binding | 71 | 111 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.076 |
| SRR1783600 | control | 1.108 |
| SRR1783602 | moderate drought stress | 0.633 |
| SRR1811619 | moderate drought stress | 0.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.257 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.276 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.079 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.084 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.568 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.051 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.066 |
| SRR2868004 | Drought Stress(Tissue:root) | 45.865 |
| SRR2967015 | Control (Tissue:root) | 35.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 77.199 |
| SRR9715740 | Leave | 90.710 |
| SRR9715741 | Leave | 108.152 |
| SRR9715739 | Root | 0.146 |
| SRR9715742 | Root | 1.645 |
| SRR9715743 | Root | 1.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.504 |
| SRR8749028 | MeJA induced 9h | 71.747 |
| SRR8749029 | MeJA induced 9h | 58.131 |
| SRR8749030 | Uninduced | 46.103 |
| SRR8749031 | Uninduced | 26.165 |
| SRR8749032 | Uninduced | 22.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.976 |
| SRR8400027 | Control-Root | 3.691 |