Gene detail information of Glyur000147s00013865.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02850.1 | 0 | STELAR K+ outward rectifier |
| NR | XP_003544361.1 | 0 | PREDICTED: potassium channel SKOR-like [Glycine max] |
| COG | YP_724331.1 | 2.00E-34 | cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q9M8S6|SKOR_ARATH | 0 | Potassium channel SKOR |
| trEMBL | tr|I1MBT8|I1MBT8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 204171 | 218018 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000147s00013865.1 | PF13639.1 | zf-RING_2 | 40 | 83 | 2.40E-07 |
| Glyur000147s00013865.1 | PF00520.26 | Ion_trans | 202 | 458 | 7.30E-09 |
| Glyur000147s00013865.1 | PF00027.24 | cNMP_binding | 557 | 644 | 1.10E-15 |
| Glyur000147s00013865.1 | PF12796.2 | Ank_2 | 689 | 777 | 6.00E-17 |
| Glyur000147s00013865.1 | PF12796.2 | Ank_2 | 783 | 869 | 9.40E-14 |
| Glyur000147s00013865.1 | PF11834.3 | DUF3354 | 887 | 955 | 5.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.799 |
| SRR1783600 | control | 5.966 |
| SRR1783602 | moderate drought stress | 6.632 |
| SRR1811619 | moderate drought stress | 6.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.057 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.811 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.693 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.122 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.275 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 46.113 |
| SRR2868004 | Drought Stress(Tissue:root) | 68.564 |
| SRR2967015 | Control (Tissue:root) | 36.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.962 |
| SRR9715740 | Leave | 7.300 |
| SRR9715741 | Leave | 8.524 |
| SRR9715739 | Root | 1.571 |
| SRR9715742 | Root | 5.990 |
| SRR9715743 | Root | 5.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.235 |
| SRR8749028 | MeJA induced 9h | 49.259 |
| SRR8749029 | MeJA induced 9h | 73.493 |
| SRR8749030 | Uninduced | 53.664 |
| SRR8749031 | Uninduced | 57.222 |
| SRR8749032 | Uninduced | 90.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.587 |
| SRR8400027 | Control-Root | 11.855 |