Gene detail information of Glyur000147s00013873.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31040.1 | 2.00E-23 | PLATZ transcription factor family protein |
| NR | XP_006575478.1 | 1.12E-101 | PREDICTED: uncharacterized protein At3g50808-like [Glycine max] |
| Swissprot | tr|P0CB19|Y3081_ARATH | 1.00E-07 | Uncharacterized protein At3g50808 |
| trEMBL | tr|V7B7R6|V7B7R6_PHAVU | 4.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:ESW13927.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 243364 | 246607 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PLATZ |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000147s00013873.1 | PF00643.19 | zf-B_box | 37 | 77 | 1.40E-05 |
| Glyur000147s00013873.1 | PF04640.9 | PLATZ | 79 | 151 | 8.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.300 |
| SRR1783600 | control | 2.236 |
| SRR1783602 | moderate drought stress | 4.746 |
| SRR1811619 | moderate drought stress | 4.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.373 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.350 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.078 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.905 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.281 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.607 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.390 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.152 |
| SRR2967015 | Control (Tissue:root) | 3.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.656 |
| SRR9715740 | Leave | 1.156 |
| SRR9715741 | Leave | 2.322 |
| SRR9715739 | Root | 0.142 |
| SRR9715742 | Root | 2.049 |
| SRR9715743 | Root | 0.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.910 |
| SRR8749028 | MeJA induced 9h | 5.265 |
| SRR8749029 | MeJA induced 9h | 6.907 |
| SRR8749030 | Uninduced | 8.129 |
| SRR8749031 | Uninduced | 5.459 |
| SRR8749032 | Uninduced | 5.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.522 |
| SRR8400027 | Control-Root | 4.549 |