Gene detail

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Gene detail information of Glyur000147s00013881.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16560.1	2.00E-37	Homeodomain-like superfamily protein
NR	XP_003544358.1	1.70E-102	PREDICTED: transcription repressor KAN1-like [Glycine max]
Swissprot	tr\|Q93WJ9\|KAN1_ARATH	8.00E-48	Transcription repressor KAN1
trEMBL	tr\|K7M8D2\|K7M8D2_SOYBN	6.00E-103	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G39260.2}

Sequence

Transcript Sequence

>Glyur000147s00013881.1
ATGAGCTTGGAGGGGGTTTTCACTGAGCCTACTACTTCAACTCCTGATCTTTCTCTTCACATAAGCCCACCAAGCATCTCCTCTTCCTTGCTTTCCAACAACAACAGAAGCAGCACCATCATAGCANGTGGCATCAATAATTATGAGTCCCAAGATTCAGCCACTAAGTTCATCACTAATTCAAGAACAACACTCTCTCAATCTCAAGCCCATAGTACAGAGCTCTCTCTGGGAATAAGGAATGAAGCAGGTCCAAAGGAATCAACAACACCACACAAACAAAATAANCACCCTTATCATTATTTCCCTCATCTTCACCACCACCCCAACAATAGTACTAGTAATAATAGTGATAGTACTAGAGGTACAACTACAACCACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCANACGGCCACTTGAGGCCAATCAAAGGGATTCCAGTGTATCATCACAACCGTTCATTCCCTTACTTGCCCTTGGACCATCATTTCAAAGACAACAAGGATCTTCATTACCTGCATCACAGGATGTGCTCATCATCATATCATGATCATCATCATCACATGCCTTCTTCTTGTTATCCCTCTCTGTCTCCTTCACCTTCCCCATACTTTGCAACGGGTATAAATCCCACTGCCACAGTTAATGGATTTTCTGTTGAACCTTTCNTCAAATCTCATCCATTATTGCACCACCACTCAACATCATCACAATATGGGGTTGTTGGTTCTAATTCTGAGGCCTCTTCTTCTGGGTTAATGAGATCATCAAGGTTAATTTTGCCTAAGCTTCCCACAAAGAGAAGCATGAGAGCACCCAGAATGCGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGGGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATACGAAGGATCTCACATTAGCTCATGTTAAAAGCCACTTGCAGGCCATTCAGAGGGATCTGGAGAAGATGAATTGTCTCCAATATTGGGTGGCAGCATTAATGACCGAGGCAGTTTGCATCAATTCGAAGACCACACAGGTAGACCGGAACGAGCAATGCAACAAGAGATGGAACACTCTTCCACCACCACTCTATGGAGTAACTCTTCCAAGTTGTGGAGAGCCATGGCTACGAAGTACATCAAACGACATAGATGGGCCCAGATCACCTATCCTCCTCCATTCACAAACAATATCAGGAGGACATCAAATTCAGGAGTACTGTGATTCAACACAACTCAAAAACAGTTTGCCAAGTTCTAATTTGGAGCACAAGAACCCGAGTTTGGAGTTCACGTTAGGCAGACCAGATTGGGATGGCAAAACACAAGTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00147	298315	302644	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000147s00013881.1	PF00249.26	Myb_DNA-binding	281	329	6.40E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.898
SRR1783600	control	0.843
SRR1783602	moderate drought stress	1.359
SRR1811619	moderate drought stress	1.249

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.155
DRR006520	Root Summer glycyrrhizin high producing strain	0.233
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.239
DRR006524	Root Summer glycyrrhizin low producing strain	0.240
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.090

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.046
SRR2868004	Drought Stress(Tissue:root)	0.430
SRR2967015	Control (Tissue:root)	0.227

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.024
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.209
SRR9715743	Root	0.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.019
SRR8749028	MeJA induced 9h	0.048
SRR8749029	MeJA induced 9h	0.132
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.013
SRR8400027	Control-Root	0.293