Gene detail information of Glyur000148s00009029.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80110.1 | 7.00E-13 | phloem protein 2-B11 |
| NR | AFK47906.1 | 4.66E-25 | unknown [Lotus japonicus] |
| Swissprot | tr|Q949S5|P2B11_ARATH | 3.00E-15 | F-box protein PP2-B11 |
| trEMBL | tr|I3T5W4|I3T5W4_LOTJA | 2.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFK47906.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 23414 | 23902 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009029.1 | PF00646.28 | F-box | 12 | 53 | 2.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.125 |
| SRR1783600 | control | 0.101 |
| SRR1783602 | moderate drought stress | 0.162 |
| SRR1811619 | moderate drought stress | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.389 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 46.384 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.060 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.977 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.832 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.286 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.396 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.404 |
| SRR2967015 | Control (Tissue:root) | 5.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.272 |
| SRR9715740 | Leave | 0.352 |
| SRR9715741 | Leave | 0.867 |
| SRR9715739 | Root | 0.470 |
| SRR9715742 | Root | 0.488 |
| SRR9715743 | Root | 0.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.186 |
| SRR8749028 | MeJA induced 9h | 51.362 |
| SRR8749029 | MeJA induced 9h | 34.964 |
| SRR8749030 | Uninduced | 53.327 |
| SRR8749031 | Uninduced | 103.512 |
| SRR8749032 | Uninduced | 32.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.755 |
| SRR8400027 | Control-Root | 0.617 |