Gene detail information of Glyur000148s00009030.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09155.1 | 1.00E-61 | phloem protein 2-B15 |
| NR | XP_003626193.1 | 3.66E-133 | F-box protein PP2-B3 [Medicago truncatula] |
| Swissprot | tr|O80494|P2B15_ARATH | 2.00E-72 | F-box protein PP2-B15 |
| trEMBL | tr|G7KWJ9|G7KWJ9_MEDTR | 1.00E-133 | F-box protein PP2-A13 {ECO:0000313|EMBL:AES82411.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 24039 | 30420 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009030.1 | PF00646.28 | F-box | 12 | 53 | 3.30E-08 |
| Glyur000148s00009030.1 | PF14299.1 | PP2 | 103 | 278 | 1.50E-48 |
| Glyur000148s00009030.1 | PF14299.1 | PP2 | 286 | 452 | 1.60E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.053 |
| SRR1783600 | control | 0.049 |
| SRR1783602 | moderate drought stress | 0.113 |
| SRR1811619 | moderate drought stress | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.508 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.671 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 72.328 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 70.789 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.512 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.561 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.846 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.313 |
| SRR2967015 | Control (Tissue:root) | 9.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.842 |
| SRR9715740 | Leave | 0.511 |
| SRR9715741 | Leave | 1.862 |
| SRR9715739 | Root | 0.692 |
| SRR9715742 | Root | 0.347 |
| SRR9715743 | Root | 0.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.412 |
| SRR8749028 | MeJA induced 9h | 54.972 |
| SRR8749029 | MeJA induced 9h | 50.484 |
| SRR8749030 | Uninduced | 54.128 |
| SRR8749031 | Uninduced | 94.435 |
| SRR8749032 | Uninduced | 112.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.480 |
| SRR8400027 | Control-Root | 1.273 |