Gene detail information of Glyur000148s00009036.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05620.10Plant invertase/pectin methylesterase inhibitor superfamily
NRXP_007146997.10hypothetical protein PHAVU_006G088000g [Phaseolus vulgaris]
COGYP_006407803.12.00E-55pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|Q9M9W7|PME22_ARATH0Pectinesterase 22 (Precursor)
trEMBLtr|V7BQY6|V7BQY6_PHAVU0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001484372046258+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000148s00009036.1PF04043.10PMEI291811.10E-27
Glyur000148s00009036.1PF01095.14Pectinesterase2365245.80E-137


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.335
SRR1783600control2.312
SRR1783602moderate drought stress2.582
SRR1811619moderate drought stress2.616

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.269
DRR006520Root Summer glycyrrhizin high producing strain5.961
DRR006521Root Winter glycyrrhizin high producing strain0.321
DRR006522Root Winter glycyrrhizin high producing strain0.274
DRR006523Root Summer glycyrrhizin low producing strain9.459
DRR006524Root Summer glycyrrhizin low producing strain9.303
DRR006525Leaf Summer glycyrrhizin high producing strain7.337
DRR006526Leaf Summer glycyrrhizin high producing strain7.321

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.204
SRR2868004Drought Stress(Tissue:root)6.661
SRR2967015Control (Tissue:root)7.045

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.992
SRR9715740Leave0.568
SRR9715741Leave1.831
SRR9715739Root2.850
SRR9715742Root5.822
SRR9715743Root6.388

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.102
SRR8749028MeJA induced 9h0.044
SRR8749029MeJA induced 9h0.056
SRR8749030Uninduced0.061
SRR8749031Uninduced0.036
SRR8749032Uninduced0.230

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.457
SRR8400027Control-Root3.601

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved