Gene detail

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Gene detail information of Glyur000148s00009037.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27870.1	2.00E-138	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_004494574.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum]
COG	YP_006407803.1	1.00E-34	pectin methylesterase [Belliella baltica DSM 15883]
Swissprot	tr\|Q3E8Z8\|PME28_ARATH	2.00E-176	Pectinesterase 28
trEMBL	tr\|G7KXH8\|G7KXH8_MEDTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000148s00009037.1
ATGTCTGGGGAAGATACACAGAAGAAGAAGAGAATCGCCATCATTGGCGTCTCTACCGTCTTACTGGTTGCCATGGTGGTGGCCGTCACGGTGAGCGTGGGTTTCAGCAAAAACGGTTCAGGCGAAGGAGCAAAGGACAACGACAAATCCCACGTGTCATCCTCCATGAAAGCCGTGAAAACCCTCTGCCAGCCAACGGATTACAAGAAGGAGTGCGAGGAAAGCCTGACCGCACAAGCGGGGAACACAACGGACCCAAGGGAGCTCATCAAAATCGCGTTCAACGTGACCATCAGCAGGATCGGAGAGGGACTCCAGAAGACGAACCTGATGCACGAGGTTGAGAGCGACCCCCGAACCAAGGAGGCACTTGACACGTGTAAGCACCTCATGCACCTATCCATCGAGGAGTTCAAGAGGTCAATAGAGAGGTTCGGGAGGTTCGACCTCAACAACCTTGACAGAATCCTCACGAGCCTCAAGACTTGTTTGGATGCGTTCGATAACACCACAACCAACGCTGGGAAAAAAATGACGGACATCTTGCAAACCGCAATGCACATGAGCAGTAACGGCCTTGCCATCATTAACGAACTCTCCAAAACGCTCAACGAGATGCACCTGACCAAAACCGCTGGGCGACGACGCCTATTGAACCAGGACTTGACGGTTATTGGTCACGATGACGAGGAGTTCGAGCTCCCCGAGTGGGTTGATGACCGTGTTGGTGTACGGAAGCTTCTTAATAAGATGACCGCACGAAAGCTCAAGGCTCACGTGGTTGTTGCAAAGGATGGCACTGGTAATTTCACAACCATCGGCGAAGCGCTCAAGCGTGTACCCATGAAGAACATGAAGCCGTTCGTTGTCTACATCAAGGAGGGCGTTTACAAAGAGTATATTGAGATCTCCAGAAACATGACCCACGTCGTTTTCATCGGTGATGGTGGCAAAAAGACACGCATCACTGGAAACAAAAACTTCATTGATGGAGTTGGTACCTACAAAACCGCCACCGTTGCTGTTGCTGGAGATTACTTTGTTGCCATGGGAATCGGGTTTGAAAACTCAGCCGGTGCCGAAAAGCATCAAGCAGTTGCATTGAGGGTCCAAGCCGACAAGTCCATCTTCTACAAATGCAGAATGGATGGGTTCCAAGACACACTCTACGCCCACACCATGCGTCAATTCTACAGGGATTGCATCATCTCAGGCACAATCGACTTCGTCTTCGGTGACGCCGTGGCCGTTCTCCAGAACTGCACTTTCGTGGTCCGAAAGCCATTGAAAAACCAGCAATGCATAGTAACGGCACAAGGAAGGAAAGAGAAAAACCAACCATCAGGACTAATCATCCAAGGAGGTTCCATCGTGGCAGACCCAAAGTACTACCCTGGTGTCACGGGAATGGACACTTGTTACTATGCTGAGGTCAACAACCGTGGGCCCGGTTCTGATGTGTCAAAGCGTGTGAAATGGCAAGGGGTTAAGAAACTCACATCACAAGGAGCAGCTGGTTTCTTGCCATCCATGTTCTTCCATGGAGATGATTGGATTAAGGTTACTAGGATTCCTTATTATGCTGGAAGGGGCTCCATGCCTGCTAATCATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00148	47061	48969	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0004857 enzyme inhibitor activity GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000148s00009037.1	PF04043.10	PMEI	54	195	1.80E-22
Glyur000148s00009037.1	PF01095.14	Pectinesterase	259	464	6.90E-93
Glyur000148s00009037.1	PF01095.14	Pectinesterase	467	515	2.90E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.220
SRR1783600	control	0.264
SRR1783602	moderate drought stress	0.102
SRR1811619	moderate drought stress	0.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.066
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.703

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.076
SRR2868004	Drought Stress(Tissue:root)	0.001
SRR2967015	Control (Tissue:root)	0.103

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.452
SRR9715740	Leave	0.376
SRR9715741	Leave	1.073
SRR9715739	Root	1.239
SRR9715742	Root	0.310
SRR9715743	Root	0.215

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.073
SRR8749032	Uninduced	0.222

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.034
SRR8400027	Control-Root	0.049