Gene detail

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Gene detail information of Glyur000148s00009056.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09090.2	0	respiratory burst oxidase homolog B
NR	XP_003554649.1	0	PREDICTED: respiratory burst oxidase homolog protein B-like isoform 1 [Glycine max]
COG	YP_007146260.1	2.00E-87	putative ferric reductase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q948T9\|RBOHB_SOLTU	0	Respiratory burst oxidase homolog protein B
trEMBL	tr\|I1NBY2\|I1NBY2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G42220.1}

Sequence

Transcript Sequence

>Glyur000148s00009056.1
ATGGAGATTCAAGAGAGCCAACAGGAGTCATGGTCGGAGACAGAGAGCACGGGGAGCAGAAGCACGCGAGTGGGCTTCAGTGGGCCTATGAGTGGGCCGTTAGTATCCAACAAGAGGAACAGCAGCAAGAAGAGCGCGAGGTTCAAGGATGAGGTGGAGGAGGACTTCGTGGAGATCACGCTGGACGTGCGCGACGACACCGTTTCGGTCCAGAACATTCGTGGCGGTGATCCCGAGACGGCGTTGCTGGCGAGCCGTCTTGAGAAACGGCCATCGTCGCTCTCCACGCGCCTCAAGCAGGTGTCGCAGGAACTGAAGCGCATGACGTCATCCAAGAAGTTCGACAGGGTCGACAGGGCCAAATCTGGAGCCGCTCGTGCNCTCAAGGGGCTCAAGTTCATGACCAAAAACGTCGGAACTGAAGGAATGACGGAGTCGAGGGAGTTTGCTGGTGAGTTGTTTGATGCATTGTCTCGTCGGCGGGGCATAACATCGGGTTCCATAACCAAGGAGCAGCTGCGCGAATATTTGGAACAAATTACTGATCAGAGCTTTGATTCAAGGCTGCAGACCTTCTTTGACATGGTTGATAAGAATGCCGACGGACGAATCACCGAAGAAGAAGTCAAAGAGATTATCGCCTTAAGCGCTTCTGCTAATAAGCTGTCAAAAATACAAGAACGTGCAGAAGAATATGCAGCCCTTATCATGGAGGAGTTGGATCCAGACAACCTTGGATTTATTGAGTTGTACAACTTGGAAATGCTTCTTTTGCAAGCACCAGCACAATCAACCCACATAACCACGGATAGTCGAGTTCTGAGCCAAATGCTGAGCCAGAAACTGGTCCCTACCAAGGAGTACAACCCCATCAAGAGGGGTTTTAAGGCACTGGCCTACTTTGTGGAGGACAATTGGAAACGGATTTGGATCATAGCCCTCTGGCTCTCCATTTGCGCTGCCCTTTTCACGTGGAAGTTCATCCAGTACAAGAATCGTGCCGTGTTTGATGTCATGGGCTATTGTGTCACAACAGCAAAGGGTGCTGCTGAGACACTCAAATTCAACATGGCCTTAATCTTATTACCTGTCTGTAGAAACACCATCACTTGGCTCAGGACCAAGACCAAATTAGGAATGGCTGTTCCCTTTGATGACAACATCAACTTTCACAAGGTGATAGCTTTTGGCATCGCAATTGGGGTAGGGCTGCATGCAATTTCGCATTTAACCTGTGACTTCCCAAGGCTATTACACGCAACAGATGCGGAATATGAGCCCATGAAGCCTTTCTTTGGGGATGAGAGGCCCAACAATTATTGGTGGTTTGTTAAGGGCACTGAGGGTTGGACTGGGATAGTCATAGTGGTGCTTATGGCTATAGCATACACTTTGGCTCAACCTTGGTTCCGAAGAAACAGGCTAAAACTCCCTAAAGCTTTGAAGAAGCTCACTGGTTTCAACGCGTTCTGGTACTCCCACCACCTCTTTGTCATTGTCTATGCGCTTCTCATTGTTCACGGATACTACCTGTACCTCTCCAAGAAATGGTACAAGAAAACGACTTGGATGTATCTCGCCGTTCCTATGATAATATACGCATGCGAGCGACTACTTCGTGCTTTTAGATCTGGCTACAAAAGTGTCAAGATTTTAAAGGTTGCAGTGTATCCAGGAAACGTATTGGCCTTGCATGTGTCTAAACCACAAGGATTTAAGTACCATAGTGGACAATATATTTTCGTTAACTGTGCTGATGTCTCCCCATTTCAATGGCATCCTTTCTCTATTACATCAGCCCCGGGAGATGATTATGTAAGCGTTCACATTCGGACTTTGGGTGACTGGACATCACAGCTGAAAGCTGTTTTCGCCAAGGCATGTCAACCGGCAAGTGGTGACCAGAGTGGTCTTCTACGAGCTGATGTCTCACAAGGCAACAACATACCAAGGATGCCAAAGCTACTGATTGATGGGCCTTATGGAGCTCCAGCTCAGGACTACAAAAACTACGAAGTAATCCTTCTGGTGGGGTTAGGAATTGGTGCTACCCCATTGATCAGCATACTCAAGGATGTACTGAACAACATGAAACAACAAAAAGACATAGAAGAAGGAGTGGTGGAAAGTGGGGTTAAAAACAATAAGAGAAAACCTTTTGCCACCAACAGGGCCTATTTCTATTGGGTTACTCGTGAGCAAGGTTCCTTTGAATGGTTTAGAGGTGTGATGGATGAGGTTGCAGAGCATGACAAGGATGGAATAATCGAGCTTCATAATTATTGCACAAGTGTGTATGAGGAAGGAGATGCTAGATCGGCTTTGATCACTATGCTTCAGTCCCTCCATCATGCAAAAAGTGGTGTGGATATAGTTTCAGGGACAAGGGTGAAGACACANTTTGCTAGGCCAAATTGGCGCACTGTCTTTAAACATGCAGCCCTCAAACACCCGGGCAAAAGAGTTGGTGTTTTTTACTGTGGGGCGCACGGATTGGTTGGAGAACTCAAAAGGCTTTCTCTGGATTTTTCAAGGAAAACCAGCACTAAATTTGATTTTCACAAAGAGAATTTTTAGATTCTTTTATTACAGTTCGTGATTTTTTTTAACAACTGTAACATATATAGTGAAGGGAGATATAATTAGTTATATTTAGTTTGCTGCTTTTTTTGTTCTAGAGGTAGCTGCTAGCTGCTAGCTGCTAGCTGCTAGCTGCTAGCTGCAATCCATTCATGATGAACTTGTATACGTGTATAAATAAATTGTATTCACTTTTGGTGTAAAGTGAAGTCACGTTGTTGTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00148	161779	167980	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13447	RBOH	EC:1.6.3.- 1.11.1.-	MAPK signaling pathway - plant	map04016
K13447	RBOH	EC:1.6.3.- 1.11.1.-	Plant-pathogen interaction	map04626

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component GO:0016020 membrane molecular_function GO:0004601 peroxidase activity GO:0005509 calcium ion binding GO:0016174 NAD(P)H oxidase activity GO:0016491 oxidoreductase activity GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000148s00009056.1	PF08414.5	NADPH_Ox	142	187	2.00E-15
Glyur000148s00009056.1	PF13499.1	EF-hand_7	165	212	5.50E-08
Glyur000148s00009056.1	PF01794.14	Ferric_reduct	348	505	1.40E-16
Glyur000148s00009056.1	PF08022.7	FAD_binding_8	548	664	3.50E-31
Glyur000148s00009056.1	PF08030.7	NAD_binding_6	671	840	8.90E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.759
SRR1783600	control	5.797
SRR1783602	moderate drought stress	2.225
SRR1811619	moderate drought stress	2.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.308
DRR006520	Root Summer glycyrrhizin high producing strain	55.054
DRR006521	Root Winter glycyrrhizin high producing strain	2.293
DRR006522	Root Winter glycyrrhizin high producing strain	2.241
DRR006523	Root Summer glycyrrhizin low producing strain	209.183
DRR006524	Root Summer glycyrrhizin low producing strain	207.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	71.814
SRR2868004	Drought Stress(Tissue:root)	153.855
SRR2967015	Control (Tissue:root)	69.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	214.842
SRR9715740	Leave	69.503
SRR9715741	Leave	433.752
SRR9715739	Root	78.505
SRR9715742	Root	401.283
SRR9715743	Root	331.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	175.965
SRR8749028	MeJA induced 9h	162.374
SRR8749029	MeJA induced 9h	149.372
SRR8749030	Uninduced	420.295
SRR8749031	Uninduced	211.185
SRR8749032	Uninduced	155.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	45.562
SRR8400027	Control-Root	114.968