Gene detail information of Glyur000148s00009059.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27660.1 | 1.00E-27 | Trypsin family protein with PDZ domain |
| NR | XP_003626259.1 | 1.44E-61 | hypothetical protein MTR_7g113170 [Medicago truncatula] |
| COG | YP_460412.1 | 2.00E-12 | serine protease [Syntrophus aciditrophicus SB] |
| Swissprot | tr|Q3E6S8|DGP14_ARATH | 7.00E-40 | Putative protease Do-like 14 |
| trEMBL | tr|A2Q336|A2Q336_MEDTR | 5.00E-62 | Trypsin-like serine protease {ECO:0000313|EMBL:AES82477.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 182982 | 187755 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08669 | HTRA2, PRSS25 | EC:3.4.21.108 | Apoptosis | map04210 |
| Apoptosis - fly | map04214 | |||
| Apoptosis - multiple species | map04215 | |||
| Parkinson's disease | map05012 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009059.1 | PF13180.1 | PDZ_2 | 65 | 148 | 2.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.367 |
| SRR1783600 | control | 4.171 |
| SRR1783602 | moderate drought stress | 5.894 |
| SRR1811619 | moderate drought stress | 5.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.742 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.945 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.181 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.293 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.378 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.389 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.330 |
| SRR2967015 | Control (Tissue:root) | 7.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.904 |
| SRR9715740 | Leave | 3.794 |
| SRR9715741 | Leave | 4.743 |
| SRR9715739 | Root | 3.682 |
| SRR9715742 | Root | 7.228 |
| SRR9715743 | Root | 6.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.464 |
| SRR8749028 | MeJA induced 9h | 4.781 |
| SRR8749029 | MeJA induced 9h | 3.818 |
| SRR8749030 | Uninduced | 4.178 |
| SRR8749031 | Uninduced | 2.079 |
| SRR8749032 | Uninduced | 2.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.711 |
| SRR8400027 | Control-Root | 9.526 |