Gene detail information of Glyur000148s00009062.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50700.1 | 3.00E-84 | indeterminate(ID)-domain 2 |
| NR | XP_003556511.1 | 0 | PREDICTED: zinc finger protein MAGPIE-like [Glycine max] |
| Swissprot | tr|Q9SCQ6|IDD2_ARATH | 5.00E-111 | Protein indeterminate-domain 2 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|I1NJ02|I1NJ02_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 205932 | 209671 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009062.1 | PF00096.21 | zf-C2H2 | 96 | 118 | 0.011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.713 |
| SRR1783600 | control | 35.883 |
| SRR1783602 | moderate drought stress | 33.700 |
| SRR1811619 | moderate drought stress | 33.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.625 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.378 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.054 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.932 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.449 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.503 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.681 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.841 |
| SRR2967015 | Control (Tissue:root) | 22.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.336 |
| SRR9715740 | Leave | 11.429 |
| SRR9715741 | Leave | 10.300 |
| SRR9715739 | Root | 5.811 |
| SRR9715742 | Root | 14.162 |
| SRR9715743 | Root | 13.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.882 |
| SRR8749028 | MeJA induced 9h | 8.513 |
| SRR8749029 | MeJA induced 9h | 5.006 |
| SRR8749030 | Uninduced | 10.893 |
| SRR8749031 | Uninduced | 15.824 |
| SRR8749032 | Uninduced | 5.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.325 |
| SRR8400027 | Control-Root | 41.719 |