Gene detail information of Glyur000148s00009076.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67500.10recovery protein 3
NRXP_006577239.10PREDICTED: DNA polymerase zeta catalytic subunit-like isoform X1 [Glycine max]
COGYP_007312033.12.00E-51DNA polymerase elongation subunit (family B) [Methanomethylovorans hollandica DSM 15978]
Swissprottr|Q766Z3|REV3_ARATH0DNA polymerase zeta catalytic subunit
trEMBLtr|I1JRC1|I1JRC1_SOYBN0DNA polymerase {ECO:0000256|RuleBase:RU000442}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00148283647299136-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02350POLZ1, rev3 EC:2.7.7.7 Fanconi anemia pathway map03460
Platinum drug resistancemap01524


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0019985  translesion synthesis


cellular_component

GO:0016035  zeta DNA polymerase complex


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0008408  3'-5' exonuclease activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000148s00009076.1PF03104.14DNA_pol_B_exo1742139.60E-06
Glyur000148s00009076.1PF03104.14DNA_pol_B_exo1117113114.70E-09
Glyur000148s00009076.1PF00136.16DNA_pol_B144018651.50E-82
Glyur000148s00009076.1PF14260.1zf-C4pol190819812.90E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.414
SRR1783600control5.414
SRR1783602moderate drought stress7.795
SRR1811619moderate drought stress7.781

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.042
DRR006520Root Summer glycyrrhizin high producing strain5.056
DRR006521Root Winter glycyrrhizin high producing strain3.005
DRR006522Root Winter glycyrrhizin high producing strain3.024
DRR006523Root Summer glycyrrhizin low producing strain5.024
DRR006524Root Summer glycyrrhizin low producing strain4.985
DRR006525Leaf Summer glycyrrhizin high producing strain4.449
DRR006526Leaf Summer glycyrrhizin high producing strain4.308

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.156
SRR2868004Drought Stress(Tissue:root)10.839
SRR2967015Control (Tissue:root)10.979

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.874
SRR9715740Leave5.955
SRR9715741Leave5.479
SRR9715739Root0.851
SRR9715742Root5.671
SRR9715743Root4.872

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.061
SRR8749028MeJA induced 9h7.393
SRR8749029MeJA induced 9h3.253
SRR8749030Uninduced4.021
SRR8749031Uninduced2.518
SRR8749032Uninduced2.511

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.043
SRR8400027Control-Root10.932

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved