Gene detail information of Glyur000148s00009079.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55020.10lipoxygenase 1
NRXP_003521704.20PREDICTED: probable linoleate 9S-lipoxygenase 5-like [Glycine max]
Swissprottr|Q43191|LOX15_SOLTU0Probable linoleate 9S-lipoxygenase 5
trEMBLtr|I1JRC2|I1JRC2_SOYBN0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00148301806307588-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15718LOX1_5 EC:1.13.11.58 Linoleic acid metabolism map00591


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000148s00009079.1PF01477.18PLAT811703.80E-19
Glyur000148s00009079.1PF00305.14Lipoxygenase1833387.70E-38
Glyur000148s00009079.1PF00305.14Lipoxygenase3385609.60E-98
Glyur000148s00009079.1PF00305.14Lipoxygenase5597748.50E-104


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.116
SRR1783600control0.052
SRR1783602moderate drought stress0.059
SRR1811619moderate drought stress0.031

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.017
DRR006520Root Summer glycyrrhizin high producing strain0.044
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.045
DRR006524Root Summer glycyrrhizin low producing strain0.089
DRR006525Leaf Summer glycyrrhizin high producing strain8.674
DRR006526Leaf Summer glycyrrhizin high producing strain8.252

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.341
SRR2868004Drought Stress(Tissue:root)3.401
SRR2967015Control (Tissue:root)0.860

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.914
SRR9715740Leave7.637
SRR9715741Leave5.955
SRR9715739Root0.000
SRR9715742Root0.358
SRR9715743Root0.223

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.021
SRR8749028MeJA induced 9h0.085
SRR8749029MeJA induced 9h0.042
SRR8749030Uninduced2.296
SRR8749031Uninduced6.140
SRR8749032Uninduced0.651

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.579
SRR8400027Control-Root0.624

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved