Gene detail information of Glyur000149s00009541.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47470.1 | 5.00E-156 | thioredoxin family protein |
| NR | ACU23175.1 | 0 | unknown [Glycine max] |
| COG | NP_622856.1 | 9.00E-24 | thiol-disulfide isomerase [Thermoanaerobacter tengcongensis MB4] |
| Swissprot | tr|P38661|PDIA6_MEDSA | 0 | Probable protein disulfide-isomerase A6 (Precursor) |
| trEMBL | tr|I1JBH8|I1JBH8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G01750.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00149 | 278 | 5649 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09584 | PDIA6, TXNDC7 | EC:5.3.4.1 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000149s00009541.1 | PF00085.15 | Thioredoxin | 30 | 133 | 2.40E-34 |
| Glyur000149s00009541.1 | PF00085.15 | Thioredoxin | 148 | 252 | 5.90E-35 |
| Glyur000149s00009541.1 | PF07749.7 | ERp29 | 269 | 363 | 3.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.055 |
| SRR1783600 | control | 71.544 |
| SRR1783602 | moderate drought stress | 53.966 |
| SRR1811619 | moderate drought stress | 53.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 111.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 108.811 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 78.919 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 77.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 76.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.930 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.994 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 294.778 |
| SRR2868004 | Drought Stress(Tissue:root) | 167.485 |
| SRR2967015 | Control (Tissue:root) | 163.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 137.785 |
| SRR9715740 | Leave | 102.432 |
| SRR9715741 | Leave | 154.332 |
| SRR9715739 | Root | 41.177 |
| SRR9715742 | Root | 96.289 |
| SRR9715743 | Root | 89.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 131.661 |
| SRR8749028 | MeJA induced 9h | 113.773 |
| SRR8749029 | MeJA induced 9h | 83.854 |
| SRR8749030 | Uninduced | 75.679 |
| SRR8749031 | Uninduced | 55.369 |
| SRR8749032 | Uninduced | 63.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 168.206 |
| SRR8400027 | Control-Root | 148.779 |