Gene detail information of Glyur000149s00009543.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02120.10CTP synthase family protein
NRXP_004495920.10PREDICTED: CTP synthase-like [Cicer arietinum]
COGYP_183606.12.00E-111CTP synthetase [Thermococcus kodakarensis KOD1]
trEMBLtr|I1JBI0|I1JBI0_SOYBN0CTP synthase {ECO:0000256|RuleBase:RU810713}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001491684322819+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01937pyrG, CTPS EC:6.3.4.2 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006221  pyrimidine nucleotide biosynthetic process


molecular_function

GO:0003883  CTP synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000149s00009543.1PF06418.9CTP_synth_N41084.40E-29
Glyur000149s00009543.1PF00117.23GATase1613959.30E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.405
SRR1783600control10.332
SRR1783602moderate drought stress13.773
SRR1811619moderate drought stress13.511

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.094
DRR006520Root Summer glycyrrhizin high producing strain18.231
DRR006521Root Winter glycyrrhizin high producing strain14.882
DRR006522Root Winter glycyrrhizin high producing strain14.490
DRR006523Root Summer glycyrrhizin low producing strain23.419
DRR006524Root Summer glycyrrhizin low producing strain23.007
DRR006525Leaf Summer glycyrrhizin high producing strain9.457
DRR006526Leaf Summer glycyrrhizin high producing strain9.446

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.705
SRR2868004Drought Stress(Tissue:root)10.297
SRR2967015Control (Tissue:root)15.325

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.880
SRR9715740Leave11.353
SRR9715741Leave8.326
SRR9715739Root3.381
SRR9715742Root8.315
SRR9715743Root7.165

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.978
SRR8749028MeJA induced 9h12.464
SRR8749029MeJA induced 9h10.475
SRR8749030Uninduced6.715
SRR8749031Uninduced3.802
SRR8749032Uninduced4.167

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.396
SRR8400027Control-Root17.577

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved