Gene detail information of Glyur000149s00009569.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48195.1 | 0 | Phox (PX) domain-containing protein |
| NR | XP_003601248.1 | 0 | Pleckstrin homology domain-containing family M member [Medicago truncatula] |
| trEMBL | tr|G7J5E3|G7J5E3_MEDTR | 0 | Phox (PX) domain protein {ECO:0000313|EMBL:AES71499.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00149 | 170935 | 176519 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000149s00009569.3 | PF13901.1 | DUF4206 | 1 | 133 | 4.20E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.967 |
| SRR1783600 | control | 8.056 |
| SRR1783602 | moderate drought stress | 8.370 |
| SRR1811619 | moderate drought stress | 8.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.219 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.141 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.909 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.669 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.225 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.027 |
| SRR2967015 | Control (Tissue:root) | 24.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.126 |
| SRR9715740 | Leave | 11.188 |
| SRR9715741 | Leave | 13.249 |
| SRR9715739 | Root | 5.307 |
| SRR9715742 | Root | 13.500 |
| SRR9715743 | Root | 11.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.476 |
| SRR8749028 | MeJA induced 9h | 16.981 |
| SRR8749029 | MeJA induced 9h | 5.360 |
| SRR8749030 | Uninduced | 14.317 |
| SRR8749031 | Uninduced | 14.016 |
| SRR8749032 | Uninduced | 10.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.505 |
| SRR8400027 | Control-Root | 15.898 |