Gene detail information of Glyur000150s00014554.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51770.2 | 0 | tetratricopeptide repeat (TPR)-containing protein |
| NR | XP_004492482.1 | 0 | PREDICTED: ethylene-overproduction protein 1-like [Cicer arietinum] |
| COG | YP_005011082.1 | 6.00E-07 | hypothetical protein [Niastella koreensis GR20-10] |
| Swissprot | tr|O65020|ETO1_ARATH | 0 | Ethylene-overproduction protein 1 |
| trEMBL | tr|V7B327|V7B327_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12219.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00150 | 41812 | 48428 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000150s00014554.1 | PF00515.23 | TPR_1 | 782 | 811 | 0.00083 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.954 |
| SRR1783600 | control | 2.956 |
| SRR1783602 | moderate drought stress | 4.220 |
| SRR1811619 | moderate drought stress | 4.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.797 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.698 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.619 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.724 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.709 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.170 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.568 |
| SRR2967015 | Control (Tissue:root) | 16.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.208 |
| SRR9715740 | Leave | 31.903 |
| SRR9715741 | Leave | 27.037 |
| SRR9715739 | Root | 0.408 |
| SRR9715742 | Root | 4.350 |
| SRR9715743 | Root | 4.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.691 |
| SRR8749028 | MeJA induced 9h | 2.602 |
| SRR8749029 | MeJA induced 9h | 1.146 |
| SRR8749030 | Uninduced | 1.946 |
| SRR8749031 | Uninduced | 5.042 |
| SRR8749032 | Uninduced | 2.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.083 |
| SRR8400027 | Control-Root | 12.318 |